Gap-free genome assembly of Salangid icefish Neosalanx taihuensis

Neosalanx taihuensis is widely distributed in freshwater and brackish water areas in China. Due to its high commercial value, it has been artificially introduced into many lakes and reservoirs, showing strong ecological adaptability. Here, a gap-free chromosome-level reference genome was constructed...

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Autores principales: Zhou, Yanfeng, Zhang, Xizhao, Jian, Jianbo, Wang, Chenhe, Fang, Di’an, Jiang, Shulun, Ren, Long, Ge, You, Wang, Hongqi, You, Yang, Chen, Chunhai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Data Descriptor
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10625578/
https://www.ncbi.nlm.nih.gov/pubmed/37925542
http://dx.doi.org/10.1038/s41597-023-02677-z
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author Zhou, Yanfeng
Zhang, Xizhao
Jian, Jianbo
Wang, Chenhe
Fang, Di’an
Jiang, Shulun
Ren, Long
Ge, You
Wang, Hongqi
You, Yang
Chen, Chunhai
author_facet Zhou, Yanfeng
Zhang, Xizhao
Jian, Jianbo
Wang, Chenhe
Fang, Di’an
Jiang, Shulun
Ren, Long
Ge, You
Wang, Hongqi
You, Yang
Chen, Chunhai
author_sort Zhou, Yanfeng
collection PubMed
description Neosalanx taihuensis is widely distributed in freshwater and brackish water areas in China. Due to its high commercial value, it has been artificially introduced into many lakes and reservoirs, showing strong ecological adaptability. Here, a gap-free chromosome-level reference genome was constructed by combining short reads, PacBio HiFi long reads, Nanopore ultralong reads and Hi-C data. The reference genome of N. taihuensis was 397.29 Mb with a contig N50 of 15.61 Mb. The assembled sequences were anchored to 28 chromosomes. Furthermore, 20,024 protein-coding genes and 98.16% of the predicted genes were annotated in publicly available biological databases. This high-quality gap-free assembled genome will provide an essential reference for studying the evolution and ecological adaptability of N. taihuensis.
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spelling pubmed-106255782023-11-06 Gap-free genome assembly of Salangid icefish Neosalanx taihuensis Zhou, Yanfeng Zhang, Xizhao Jian, Jianbo Wang, Chenhe Fang, Di’an Jiang, Shulun Ren, Long Ge, You Wang, Hongqi You, Yang Chen, Chunhai Sci Data Data Descriptor Neosalanx taihuensis is widely distributed in freshwater and brackish water areas in China. Due to its high commercial value, it has been artificially introduced into many lakes and reservoirs, showing strong ecological adaptability. Here, a gap-free chromosome-level reference genome was constructed by combining short reads, PacBio HiFi long reads, Nanopore ultralong reads and Hi-C data. The reference genome of N. taihuensis was 397.29 Mb with a contig N50 of 15.61 Mb. The assembled sequences were anchored to 28 chromosomes. Furthermore, 20,024 protein-coding genes and 98.16% of the predicted genes were annotated in publicly available biological databases. This high-quality gap-free assembled genome will provide an essential reference for studying the evolution and ecological adaptability of N. taihuensis. Nature Publishing Group UK 2023-11-04 /pmc/articles/PMC10625578/ /pubmed/37925542 http://dx.doi.org/10.1038/s41597-023-02677-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Zhou, Yanfeng
Zhang, Xizhao
Jian, Jianbo
Wang, Chenhe
Fang, Di’an
Jiang, Shulun
Ren, Long
Ge, You
Wang, Hongqi
You, Yang
Chen, Chunhai
Gap-free genome assembly of Salangid icefish Neosalanx taihuensis
title Gap-free genome assembly of Salangid icefish Neosalanx taihuensis
title_full Gap-free genome assembly of Salangid icefish Neosalanx taihuensis
title_fullStr Gap-free genome assembly of Salangid icefish Neosalanx taihuensis
title_full_unstemmed Gap-free genome assembly of Salangid icefish Neosalanx taihuensis
title_short Gap-free genome assembly of Salangid icefish Neosalanx taihuensis
title_sort gap-free genome assembly of salangid icefish neosalanx taihuensis
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10625578/
https://www.ncbi.nlm.nih.gov/pubmed/37925542
http://dx.doi.org/10.1038/s41597-023-02677-z
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