Chromosome-level genome assembly of the northern Pacific seastar Asterias amurensis

Asterias amurensis has attracted widespread concern because of its population outbreaks, which has impacted fisheries and aquaculture, as well as disrupting local ecosystems. A high-quality reference genome is necessary to better investigate mechanisms of outbreak and adaptive changes. Combining Pac...

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Autores principales: Wang, Yanlin, Wang, Yixin, Yang, Yujia, Ni, Gang, Li, Yulong, Chen, Muyan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Data Descriptor
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10625585/
https://www.ncbi.nlm.nih.gov/pubmed/37925473
http://dx.doi.org/10.1038/s41597-023-02688-w
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author Wang, Yanlin
Wang, Yixin
Yang, Yujia
Ni, Gang
Li, Yulong
Chen, Muyan
author_facet Wang, Yanlin
Wang, Yixin
Yang, Yujia
Ni, Gang
Li, Yulong
Chen, Muyan
author_sort Wang, Yanlin
collection PubMed
description Asterias amurensis has attracted widespread concern because of its population outbreaks, which has impacted fisheries and aquaculture, as well as disrupting local ecosystems. A high-quality reference genome is necessary to better investigate mechanisms of outbreak and adaptive changes. Combining PacBio HiFi and Hi-C sequencing data, we generated a chromosome-level A. amurensis genome with a size of 491.53 Mb. The contig N50 and scaffold N50 were 8.05 and 23.75 Mb, respectively. The result of BUSCO analysis revealed a completeness score of 98.85%. A total of 16,531 protein-coding genes were predicted in the genome, of which 94.63% were functionally annotated. The high-quality genome assembly resulting from this study will provide a valuable genetic resource for future research on the mechanism of population outbreaks and invasion ecology.
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spelling pubmed-106255852023-11-06 Chromosome-level genome assembly of the northern Pacific seastar Asterias amurensis Wang, Yanlin Wang, Yixin Yang, Yujia Ni, Gang Li, Yulong Chen, Muyan Sci Data Data Descriptor Asterias amurensis has attracted widespread concern because of its population outbreaks, which has impacted fisheries and aquaculture, as well as disrupting local ecosystems. A high-quality reference genome is necessary to better investigate mechanisms of outbreak and adaptive changes. Combining PacBio HiFi and Hi-C sequencing data, we generated a chromosome-level A. amurensis genome with a size of 491.53 Mb. The contig N50 and scaffold N50 were 8.05 and 23.75 Mb, respectively. The result of BUSCO analysis revealed a completeness score of 98.85%. A total of 16,531 protein-coding genes were predicted in the genome, of which 94.63% were functionally annotated. The high-quality genome assembly resulting from this study will provide a valuable genetic resource for future research on the mechanism of population outbreaks and invasion ecology. Nature Publishing Group UK 2023-11-04 /pmc/articles/PMC10625585/ /pubmed/37925473 http://dx.doi.org/10.1038/s41597-023-02688-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Wang, Yanlin
Wang, Yixin
Yang, Yujia
Ni, Gang
Li, Yulong
Chen, Muyan
Chromosome-level genome assembly of the northern Pacific seastar Asterias amurensis
title Chromosome-level genome assembly of the northern Pacific seastar Asterias amurensis
title_full Chromosome-level genome assembly of the northern Pacific seastar Asterias amurensis
title_fullStr Chromosome-level genome assembly of the northern Pacific seastar Asterias amurensis
title_full_unstemmed Chromosome-level genome assembly of the northern Pacific seastar Asterias amurensis
title_short Chromosome-level genome assembly of the northern Pacific seastar Asterias amurensis
title_sort chromosome-level genome assembly of the northern pacific seastar asterias amurensis
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10625585/
https://www.ncbi.nlm.nih.gov/pubmed/37925473
http://dx.doi.org/10.1038/s41597-023-02688-w
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