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TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database

In recent years, neoantigens have been recognized as ideal targets for tumor immunotherapy. With the development of neoantigen-based tumor immunotherapy, comprehensive neoantigen databases are urgently needed to meet the growing demand for clinical studies. We have built the tumor-specific neoantige...

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Detalles Bibliográficos
Autores principales: Wu, Jingcheng, Chen, Wenfan, Zhou, Yuxuan, Chi, Ying, Hua, Xiansheng, Wu, Jian, Gu, Xun, Chen, Shuqing, Zhou, Zhan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10626054/
https://www.ncbi.nlm.nih.gov/pubmed/36209954
http://dx.doi.org/10.1016/j.gpb.2022.09.012
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author Wu, Jingcheng
Chen, Wenfan
Zhou, Yuxuan
Chi, Ying
Hua, Xiansheng
Wu, Jian
Gu, Xun
Chen, Shuqing
Zhou, Zhan
author_facet Wu, Jingcheng
Chen, Wenfan
Zhou, Yuxuan
Chi, Ying
Hua, Xiansheng
Wu, Jian
Gu, Xun
Chen, Shuqing
Zhou, Zhan
author_sort Wu, Jingcheng
collection PubMed
description In recent years, neoantigens have been recognized as ideal targets for tumor immunotherapy. With the development of neoantigen-based tumor immunotherapy, comprehensive neoantigen databases are urgently needed to meet the growing demand for clinical studies. We have built the tumor-specific neoantigen database (TSNAdb) previously, which has attracted much attention. In this study, we provide TSNAdb v2.0, an updated version of the TSNAdb. TSNAdb v2.0 offers several new features, including (1) adopting more stringent criteria for neoantigen identification, (2) providing predicted neoantigens derived from three types of somatic mutations, and (3) collecting experimentally validated neoantigens and dividing them according to the experimental level. TSNAdb v2.0 is freely available at https://pgx.zju.edu.cn/tsnadb/.
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spelling pubmed-106260542023-11-07 TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database Wu, Jingcheng Chen, Wenfan Zhou, Yuxuan Chi, Ying Hua, Xiansheng Wu, Jian Gu, Xun Chen, Shuqing Zhou, Zhan Genomics Proteomics Bioinformatics Database In recent years, neoantigens have been recognized as ideal targets for tumor immunotherapy. With the development of neoantigen-based tumor immunotherapy, comprehensive neoantigen databases are urgently needed to meet the growing demand for clinical studies. We have built the tumor-specific neoantigen database (TSNAdb) previously, which has attracted much attention. In this study, we provide TSNAdb v2.0, an updated version of the TSNAdb. TSNAdb v2.0 offers several new features, including (1) adopting more stringent criteria for neoantigen identification, (2) providing predicted neoantigens derived from three types of somatic mutations, and (3) collecting experimentally validated neoantigens and dividing them according to the experimental level. TSNAdb v2.0 is freely available at https://pgx.zju.edu.cn/tsnadb/. Elsevier 2023-04 2022-10-06 /pmc/articles/PMC10626054/ /pubmed/36209954 http://dx.doi.org/10.1016/j.gpb.2022.09.012 Text en © 2023 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Database
Wu, Jingcheng
Chen, Wenfan
Zhou, Yuxuan
Chi, Ying
Hua, Xiansheng
Wu, Jian
Gu, Xun
Chen, Shuqing
Zhou, Zhan
TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database
title TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database
title_full TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database
title_fullStr TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database
title_full_unstemmed TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database
title_short TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database
title_sort tsnadb v2.0: the updated version of tumor-specific neoantigen database
topic Database
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10626054/
https://www.ncbi.nlm.nih.gov/pubmed/36209954
http://dx.doi.org/10.1016/j.gpb.2022.09.012
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