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TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database
In recent years, neoantigens have been recognized as ideal targets for tumor immunotherapy. With the development of neoantigen-based tumor immunotherapy, comprehensive neoantigen databases are urgently needed to meet the growing demand for clinical studies. We have built the tumor-specific neoantige...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10626054/ https://www.ncbi.nlm.nih.gov/pubmed/36209954 http://dx.doi.org/10.1016/j.gpb.2022.09.012 |
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author | Wu, Jingcheng Chen, Wenfan Zhou, Yuxuan Chi, Ying Hua, Xiansheng Wu, Jian Gu, Xun Chen, Shuqing Zhou, Zhan |
author_facet | Wu, Jingcheng Chen, Wenfan Zhou, Yuxuan Chi, Ying Hua, Xiansheng Wu, Jian Gu, Xun Chen, Shuqing Zhou, Zhan |
author_sort | Wu, Jingcheng |
collection | PubMed |
description | In recent years, neoantigens have been recognized as ideal targets for tumor immunotherapy. With the development of neoantigen-based tumor immunotherapy, comprehensive neoantigen databases are urgently needed to meet the growing demand for clinical studies. We have built the tumor-specific neoantigen database (TSNAdb) previously, which has attracted much attention. In this study, we provide TSNAdb v2.0, an updated version of the TSNAdb. TSNAdb v2.0 offers several new features, including (1) adopting more stringent criteria for neoantigen identification, (2) providing predicted neoantigens derived from three types of somatic mutations, and (3) collecting experimentally validated neoantigens and dividing them according to the experimental level. TSNAdb v2.0 is freely available at https://pgx.zju.edu.cn/tsnadb/. |
format | Online Article Text |
id | pubmed-10626054 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-106260542023-11-07 TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database Wu, Jingcheng Chen, Wenfan Zhou, Yuxuan Chi, Ying Hua, Xiansheng Wu, Jian Gu, Xun Chen, Shuqing Zhou, Zhan Genomics Proteomics Bioinformatics Database In recent years, neoantigens have been recognized as ideal targets for tumor immunotherapy. With the development of neoantigen-based tumor immunotherapy, comprehensive neoantigen databases are urgently needed to meet the growing demand for clinical studies. We have built the tumor-specific neoantigen database (TSNAdb) previously, which has attracted much attention. In this study, we provide TSNAdb v2.0, an updated version of the TSNAdb. TSNAdb v2.0 offers several new features, including (1) adopting more stringent criteria for neoantigen identification, (2) providing predicted neoantigens derived from three types of somatic mutations, and (3) collecting experimentally validated neoantigens and dividing them according to the experimental level. TSNAdb v2.0 is freely available at https://pgx.zju.edu.cn/tsnadb/. Elsevier 2023-04 2022-10-06 /pmc/articles/PMC10626054/ /pubmed/36209954 http://dx.doi.org/10.1016/j.gpb.2022.09.012 Text en © 2023 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Database Wu, Jingcheng Chen, Wenfan Zhou, Yuxuan Chi, Ying Hua, Xiansheng Wu, Jian Gu, Xun Chen, Shuqing Zhou, Zhan TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database |
title | TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database |
title_full | TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database |
title_fullStr | TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database |
title_full_unstemmed | TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database |
title_short | TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database |
title_sort | tsnadb v2.0: the updated version of tumor-specific neoantigen database |
topic | Database |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10626054/ https://www.ncbi.nlm.nih.gov/pubmed/36209954 http://dx.doi.org/10.1016/j.gpb.2022.09.012 |
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