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Urinary SPP1 has potential as a non‐invasive diagnostic marker for focal segmental glomerulosclerosis

Focal segmental glomerulosclerosis (FSGS) is a type of chronic glomerular nephropathy showing characteristic glomerular sclerosis, diagnosed by kidney biopsy. However, it is difficult and expensive to monitor disease progression with repeated renal biopsy in clinical practice, and thus here we explo...

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Autores principales: Ye, Qinglin, Xu, Guiling, Xue, Chao, Pang, Shuting, Xie, Boji, Huang, Guanwen, Li, Haoyu, Chen, Xuesong, Yang, Rirong, Li, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10626280/
https://www.ncbi.nlm.nih.gov/pubmed/37696527
http://dx.doi.org/10.1002/2211-5463.13704
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author Ye, Qinglin
Xu, Guiling
Xue, Chao
Pang, Shuting
Xie, Boji
Huang, Guanwen
Li, Haoyu
Chen, Xuesong
Yang, Rirong
Li, Wei
author_facet Ye, Qinglin
Xu, Guiling
Xue, Chao
Pang, Shuting
Xie, Boji
Huang, Guanwen
Li, Haoyu
Chen, Xuesong
Yang, Rirong
Li, Wei
author_sort Ye, Qinglin
collection PubMed
description Focal segmental glomerulosclerosis (FSGS) is a type of chronic glomerular nephropathy showing characteristic glomerular sclerosis, diagnosed by kidney biopsy. However, it is difficult and expensive to monitor disease progression with repeated renal biopsy in clinical practice, and thus here we explored the feasibility of urine biomarkers as non‐invasive diagnostic tools. We downloaded scRNA‐seq datasets of 20 urine cell samples and 3 kidney tissues and obtained two gene lists encoding extracellular proteins for bioinformatic analysis; in addition, we identified key EP‐Genes by immunohistochemical staining and performed bulk RNA sequencing with 12 urine samples. We report that urine cells and kidney cells were correlated. A total of 64 EP‐Genes were acquired by intersecting genes of distal tubular cluster with extracellular proteins. Function enrichment analysis showed that EP‐Genes might be involved in the immune response and extracellular components. Six key EP‐Genes were identified and correlated with renal function. IMC showed that key EP‐Genes were located mainly in tubules. Cross verification and examination of a urine RNAseq dataset showed that SPP1 had diagnostic potential for FSGS. The presence of urine SPP1 was primarily associated with macrophage infiltration in kidney, and the pathogenesis of FSGS may be related to innate immunity. Urinary cells seemed to be strongly similar to kidney cells. In summary, SPP1 levels reflect renal function and may have potential as a biomarker for non‐invasive diagnosis of FSGS.
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spelling pubmed-106262802023-11-07 Urinary SPP1 has potential as a non‐invasive diagnostic marker for focal segmental glomerulosclerosis Ye, Qinglin Xu, Guiling Xue, Chao Pang, Shuting Xie, Boji Huang, Guanwen Li, Haoyu Chen, Xuesong Yang, Rirong Li, Wei FEBS Open Bio Research Articles Focal segmental glomerulosclerosis (FSGS) is a type of chronic glomerular nephropathy showing characteristic glomerular sclerosis, diagnosed by kidney biopsy. However, it is difficult and expensive to monitor disease progression with repeated renal biopsy in clinical practice, and thus here we explored the feasibility of urine biomarkers as non‐invasive diagnostic tools. We downloaded scRNA‐seq datasets of 20 urine cell samples and 3 kidney tissues and obtained two gene lists encoding extracellular proteins for bioinformatic analysis; in addition, we identified key EP‐Genes by immunohistochemical staining and performed bulk RNA sequencing with 12 urine samples. We report that urine cells and kidney cells were correlated. A total of 64 EP‐Genes were acquired by intersecting genes of distal tubular cluster with extracellular proteins. Function enrichment analysis showed that EP‐Genes might be involved in the immune response and extracellular components. Six key EP‐Genes were identified and correlated with renal function. IMC showed that key EP‐Genes were located mainly in tubules. Cross verification and examination of a urine RNAseq dataset showed that SPP1 had diagnostic potential for FSGS. The presence of urine SPP1 was primarily associated with macrophage infiltration in kidney, and the pathogenesis of FSGS may be related to innate immunity. Urinary cells seemed to be strongly similar to kidney cells. In summary, SPP1 levels reflect renal function and may have potential as a biomarker for non‐invasive diagnosis of FSGS. John Wiley and Sons Inc. 2023-09-27 /pmc/articles/PMC10626280/ /pubmed/37696527 http://dx.doi.org/10.1002/2211-5463.13704 Text en © 2023 The Authors. FEBS Open Bio published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Ye, Qinglin
Xu, Guiling
Xue, Chao
Pang, Shuting
Xie, Boji
Huang, Guanwen
Li, Haoyu
Chen, Xuesong
Yang, Rirong
Li, Wei
Urinary SPP1 has potential as a non‐invasive diagnostic marker for focal segmental glomerulosclerosis
title Urinary SPP1 has potential as a non‐invasive diagnostic marker for focal segmental glomerulosclerosis
title_full Urinary SPP1 has potential as a non‐invasive diagnostic marker for focal segmental glomerulosclerosis
title_fullStr Urinary SPP1 has potential as a non‐invasive diagnostic marker for focal segmental glomerulosclerosis
title_full_unstemmed Urinary SPP1 has potential as a non‐invasive diagnostic marker for focal segmental glomerulosclerosis
title_short Urinary SPP1 has potential as a non‐invasive diagnostic marker for focal segmental glomerulosclerosis
title_sort urinary spp1 has potential as a non‐invasive diagnostic marker for focal segmental glomerulosclerosis
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10626280/
https://www.ncbi.nlm.nih.gov/pubmed/37696527
http://dx.doi.org/10.1002/2211-5463.13704
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