Cargando…

A Quasi Time-Reversible Scheme Based on Density Matrix Extrapolation on the Grassmann Manifold for Born–Oppenheimer Molecular Dynamics

[Image: see text] This Letter introduces the so-called Quasi Time-Reversible scheme based on Grassmann extrapolation (QTR G-Ext) of density matrices for an accurate calculation of initial guesses in Born–Oppenheimer Molecular Dynamics (BOMD) simulations. The method shows excellent results on four la...

Descripción completa

Detalles Bibliográficos
Autores principales: Pes, Federica, Polack, Étienne, Mazzeo, Patrizia, Dusson, Geneviève, Stamm, Benjamin, Lipparini, Filippo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10626629/
https://www.ncbi.nlm.nih.gov/pubmed/37879072
http://dx.doi.org/10.1021/acs.jpclett.3c02098
_version_ 1785131375081291776
author Pes, Federica
Polack, Étienne
Mazzeo, Patrizia
Dusson, Geneviève
Stamm, Benjamin
Lipparini, Filippo
author_facet Pes, Federica
Polack, Étienne
Mazzeo, Patrizia
Dusson, Geneviève
Stamm, Benjamin
Lipparini, Filippo
author_sort Pes, Federica
collection PubMed
description [Image: see text] This Letter introduces the so-called Quasi Time-Reversible scheme based on Grassmann extrapolation (QTR G-Ext) of density matrices for an accurate calculation of initial guesses in Born–Oppenheimer Molecular Dynamics (BOMD) simulations. The method shows excellent results on four large molecular systems that are representative of real-life production applications, ranging from 21 to 94 atoms simulated with Kohn–Sham (KS) density functional theory surrounded with a classical environment with 6k to 16k atoms. Namely, it clearly reduces the number of self-consistent field iterations while at the same time achieving energy-conserving simulations, resulting in a considerable speed-up of BOMD simulations even when tight convergence of the KS equations is required.
format Online
Article
Text
id pubmed-10626629
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-106266292023-11-07 A Quasi Time-Reversible Scheme Based on Density Matrix Extrapolation on the Grassmann Manifold for Born–Oppenheimer Molecular Dynamics Pes, Federica Polack, Étienne Mazzeo, Patrizia Dusson, Geneviève Stamm, Benjamin Lipparini, Filippo J Phys Chem Lett [Image: see text] This Letter introduces the so-called Quasi Time-Reversible scheme based on Grassmann extrapolation (QTR G-Ext) of density matrices for an accurate calculation of initial guesses in Born–Oppenheimer Molecular Dynamics (BOMD) simulations. The method shows excellent results on four large molecular systems that are representative of real-life production applications, ranging from 21 to 94 atoms simulated with Kohn–Sham (KS) density functional theory surrounded with a classical environment with 6k to 16k atoms. Namely, it clearly reduces the number of self-consistent field iterations while at the same time achieving energy-conserving simulations, resulting in a considerable speed-up of BOMD simulations even when tight convergence of the KS equations is required. American Chemical Society 2023-10-25 /pmc/articles/PMC10626629/ /pubmed/37879072 http://dx.doi.org/10.1021/acs.jpclett.3c02098 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Pes, Federica
Polack, Étienne
Mazzeo, Patrizia
Dusson, Geneviève
Stamm, Benjamin
Lipparini, Filippo
A Quasi Time-Reversible Scheme Based on Density Matrix Extrapolation on the Grassmann Manifold for Born–Oppenheimer Molecular Dynamics
title A Quasi Time-Reversible Scheme Based on Density Matrix Extrapolation on the Grassmann Manifold for Born–Oppenheimer Molecular Dynamics
title_full A Quasi Time-Reversible Scheme Based on Density Matrix Extrapolation on the Grassmann Manifold for Born–Oppenheimer Molecular Dynamics
title_fullStr A Quasi Time-Reversible Scheme Based on Density Matrix Extrapolation on the Grassmann Manifold for Born–Oppenheimer Molecular Dynamics
title_full_unstemmed A Quasi Time-Reversible Scheme Based on Density Matrix Extrapolation on the Grassmann Manifold for Born–Oppenheimer Molecular Dynamics
title_short A Quasi Time-Reversible Scheme Based on Density Matrix Extrapolation on the Grassmann Manifold for Born–Oppenheimer Molecular Dynamics
title_sort quasi time-reversible scheme based on density matrix extrapolation on the grassmann manifold for born–oppenheimer molecular dynamics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10626629/
https://www.ncbi.nlm.nih.gov/pubmed/37879072
http://dx.doi.org/10.1021/acs.jpclett.3c02098
work_keys_str_mv AT pesfederica aquasitimereversibleschemebasedondensitymatrixextrapolationonthegrassmannmanifoldforbornoppenheimermoleculardynamics
AT polacketienne aquasitimereversibleschemebasedondensitymatrixextrapolationonthegrassmannmanifoldforbornoppenheimermoleculardynamics
AT mazzeopatrizia aquasitimereversibleschemebasedondensitymatrixextrapolationonthegrassmannmanifoldforbornoppenheimermoleculardynamics
AT dussongenevieve aquasitimereversibleschemebasedondensitymatrixextrapolationonthegrassmannmanifoldforbornoppenheimermoleculardynamics
AT stammbenjamin aquasitimereversibleschemebasedondensitymatrixextrapolationonthegrassmannmanifoldforbornoppenheimermoleculardynamics
AT lipparinifilippo aquasitimereversibleschemebasedondensitymatrixextrapolationonthegrassmannmanifoldforbornoppenheimermoleculardynamics
AT pesfederica quasitimereversibleschemebasedondensitymatrixextrapolationonthegrassmannmanifoldforbornoppenheimermoleculardynamics
AT polacketienne quasitimereversibleschemebasedondensitymatrixextrapolationonthegrassmannmanifoldforbornoppenheimermoleculardynamics
AT mazzeopatrizia quasitimereversibleschemebasedondensitymatrixextrapolationonthegrassmannmanifoldforbornoppenheimermoleculardynamics
AT dussongenevieve quasitimereversibleschemebasedondensitymatrixextrapolationonthegrassmannmanifoldforbornoppenheimermoleculardynamics
AT stammbenjamin quasitimereversibleschemebasedondensitymatrixextrapolationonthegrassmannmanifoldforbornoppenheimermoleculardynamics
AT lipparinifilippo quasitimereversibleschemebasedondensitymatrixextrapolationonthegrassmannmanifoldforbornoppenheimermoleculardynamics