Cargando…
The complete mitochondrial genome of a wood-decaying fungus Vanderbylia fraxinea (Polyporaceae, Polyporales)
Vanderbylia fraxinea (Bull.) D.A. Reid, 1973 is an important wood-inhabiting fungus that plays a significant role in nutrient recycling in most forest ecosystems. In this study, the complete mitochondrial genome of V. fraxinea was characterized through de novo assembly using Illumina sequencing data...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10627039/ https://www.ncbi.nlm.nih.gov/pubmed/37937099 http://dx.doi.org/10.1080/23802359.2023.2275832 |
_version_ | 1785131457348370432 |
---|---|
author | Cho, Sung-Eun Kang, Heonil Lee, Dong-Hyeon Seo, Sang-Tae Kim, Namkyu Lee, Sanggon Kim, Misong Shin, Keumchul |
author_facet | Cho, Sung-Eun Kang, Heonil Lee, Dong-Hyeon Seo, Sang-Tae Kim, Namkyu Lee, Sanggon Kim, Misong Shin, Keumchul |
author_sort | Cho, Sung-Eun |
collection | PubMed |
description | Vanderbylia fraxinea (Bull.) D.A. Reid, 1973 is an important wood-inhabiting fungus that plays a significant role in nutrient recycling in most forest ecosystems. In this study, the complete mitochondrial genome of V. fraxinea was characterized through de novo assembly using Illumina sequencing data and genome annotation. The mitochondrial genome is a circular molecule of 115,473 bp with a GC content of 28.66%. It comprises a total of 62 genes. Among these, 36 are protein-coding genes including 21 free-standing open reading frames (ORFs), 24 transfer RNA genes, and two ribosomal RNA genes. Core gene set commonly found in fungal mitochondrial genomes is also present in this genome, such as the apocytochrome b (cob), three subunits of the cytochrome c oxidase (cox1, cox2, and cox3), seven subunits of the NADH dehydrogenase (nad1, nad2, nad3, nad4, nad4L, nad5, and nad6), and three subunits of the ATP synthase (atp6, atp8, and atp9), as well as ribosomal RNA subunits (rns and rnl) and a set of transfer RNA genes. Phylogenetic analysis of the protein-coding sequences from the mitochondrial genome revealed a close relationship between V. fraxinea and the Ganoderma species within the Polyporaceae family. |
format | Online Article Text |
id | pubmed-10627039 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-106270392023-11-07 The complete mitochondrial genome of a wood-decaying fungus Vanderbylia fraxinea (Polyporaceae, Polyporales) Cho, Sung-Eun Kang, Heonil Lee, Dong-Hyeon Seo, Sang-Tae Kim, Namkyu Lee, Sanggon Kim, Misong Shin, Keumchul Mitochondrial DNA B Resour Mitogenome Announcement Vanderbylia fraxinea (Bull.) D.A. Reid, 1973 is an important wood-inhabiting fungus that plays a significant role in nutrient recycling in most forest ecosystems. In this study, the complete mitochondrial genome of V. fraxinea was characterized through de novo assembly using Illumina sequencing data and genome annotation. The mitochondrial genome is a circular molecule of 115,473 bp with a GC content of 28.66%. It comprises a total of 62 genes. Among these, 36 are protein-coding genes including 21 free-standing open reading frames (ORFs), 24 transfer RNA genes, and two ribosomal RNA genes. Core gene set commonly found in fungal mitochondrial genomes is also present in this genome, such as the apocytochrome b (cob), three subunits of the cytochrome c oxidase (cox1, cox2, and cox3), seven subunits of the NADH dehydrogenase (nad1, nad2, nad3, nad4, nad4L, nad5, and nad6), and three subunits of the ATP synthase (atp6, atp8, and atp9), as well as ribosomal RNA subunits (rns and rnl) and a set of transfer RNA genes. Phylogenetic analysis of the protein-coding sequences from the mitochondrial genome revealed a close relationship between V. fraxinea and the Ganoderma species within the Polyporaceae family. Taylor & Francis 2023-11-03 /pmc/articles/PMC10627039/ /pubmed/37937099 http://dx.doi.org/10.1080/23802359.2023.2275832 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent. |
spellingShingle | Mitogenome Announcement Cho, Sung-Eun Kang, Heonil Lee, Dong-Hyeon Seo, Sang-Tae Kim, Namkyu Lee, Sanggon Kim, Misong Shin, Keumchul The complete mitochondrial genome of a wood-decaying fungus Vanderbylia fraxinea (Polyporaceae, Polyporales) |
title | The complete mitochondrial genome of a wood-decaying fungus Vanderbylia fraxinea (Polyporaceae, Polyporales) |
title_full | The complete mitochondrial genome of a wood-decaying fungus Vanderbylia fraxinea (Polyporaceae, Polyporales) |
title_fullStr | The complete mitochondrial genome of a wood-decaying fungus Vanderbylia fraxinea (Polyporaceae, Polyporales) |
title_full_unstemmed | The complete mitochondrial genome of a wood-decaying fungus Vanderbylia fraxinea (Polyporaceae, Polyporales) |
title_short | The complete mitochondrial genome of a wood-decaying fungus Vanderbylia fraxinea (Polyporaceae, Polyporales) |
title_sort | complete mitochondrial genome of a wood-decaying fungus vanderbylia fraxinea (polyporaceae, polyporales) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10627039/ https://www.ncbi.nlm.nih.gov/pubmed/37937099 http://dx.doi.org/10.1080/23802359.2023.2275832 |
work_keys_str_mv | AT chosungeun thecompletemitochondrialgenomeofawooddecayingfungusvanderbyliafraxineapolyporaceaepolyporales AT kangheonil thecompletemitochondrialgenomeofawooddecayingfungusvanderbyliafraxineapolyporaceaepolyporales AT leedonghyeon thecompletemitochondrialgenomeofawooddecayingfungusvanderbyliafraxineapolyporaceaepolyporales AT seosangtae thecompletemitochondrialgenomeofawooddecayingfungusvanderbyliafraxineapolyporaceaepolyporales AT kimnamkyu thecompletemitochondrialgenomeofawooddecayingfungusvanderbyliafraxineapolyporaceaepolyporales AT leesanggon thecompletemitochondrialgenomeofawooddecayingfungusvanderbyliafraxineapolyporaceaepolyporales AT kimmisong thecompletemitochondrialgenomeofawooddecayingfungusvanderbyliafraxineapolyporaceaepolyporales AT shinkeumchul thecompletemitochondrialgenomeofawooddecayingfungusvanderbyliafraxineapolyporaceaepolyporales AT chosungeun completemitochondrialgenomeofawooddecayingfungusvanderbyliafraxineapolyporaceaepolyporales AT kangheonil completemitochondrialgenomeofawooddecayingfungusvanderbyliafraxineapolyporaceaepolyporales AT leedonghyeon completemitochondrialgenomeofawooddecayingfungusvanderbyliafraxineapolyporaceaepolyporales AT seosangtae completemitochondrialgenomeofawooddecayingfungusvanderbyliafraxineapolyporaceaepolyporales AT kimnamkyu completemitochondrialgenomeofawooddecayingfungusvanderbyliafraxineapolyporaceaepolyporales AT leesanggon completemitochondrialgenomeofawooddecayingfungusvanderbyliafraxineapolyporaceaepolyporales AT kimmisong completemitochondrialgenomeofawooddecayingfungusvanderbyliafraxineapolyporaceaepolyporales AT shinkeumchul completemitochondrialgenomeofawooddecayingfungusvanderbyliafraxineapolyporaceaepolyporales |