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Application of Deep Learning in Clinical Settings for Detecting and Classifying Malaria Parasites in Thin Blood Smears

BACKGROUND: Scarcity of annotated image data sets of thin blood smears makes expert-level differentiation among Plasmodium species challenging. Here, we aimed to establish a deep learning algorithm for identifying and classifying malaria parasites in thin blood smears and evaluate its performance an...

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Autores principales: Wang, Geng, Luo, Guoju, Lian, Heqing, Chen, Lei, Wu, Wei, Liu, Hui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10627339/
https://www.ncbi.nlm.nih.gov/pubmed/37937045
http://dx.doi.org/10.1093/ofid/ofad469
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author Wang, Geng
Luo, Guoju
Lian, Heqing
Chen, Lei
Wu, Wei
Liu, Hui
author_facet Wang, Geng
Luo, Guoju
Lian, Heqing
Chen, Lei
Wu, Wei
Liu, Hui
author_sort Wang, Geng
collection PubMed
description BACKGROUND: Scarcity of annotated image data sets of thin blood smears makes expert-level differentiation among Plasmodium species challenging. Here, we aimed to establish a deep learning algorithm for identifying and classifying malaria parasites in thin blood smears and evaluate its performance and clinical prospect. METHODS: You Only Look Once v7 was used as the backbone network for training the artificial intelligence algorithm model. The training, validation, and test sets for each malaria parasite category were randomly selected. A comprehensive analysis was performed on 12 708 thin blood smear images of various infective stages of 12 546 malaria parasites, including P falciparum, P vivax, P malariae, P ovale, P knowlesi, and P cynomolgi. Peripheral blood samples were obtained from 380 patients diagnosed with malaria. Additionally, blood samples from monkeys diagnosed with malaria were used to analyze P cynomolgi. The accuracy for detecting Plasmodium-infected blood cells was assessed through various evaluation metrics. RESULTS: The total time to identify 1116 malaria parasites was 13 seconds, with an average analysis time of 0.01 seconds for each parasite in the test set. The average precision was 0.902, with a recall and precision of infected erythrocytes of 96.0% and 94.9%, respectively. Sensitivity and specificity exceeded 96.8% and 99.3%, with an area under the receiver operating characteristic curve >0.999. The highest sensitivity (97.8%) and specificity (99.8%) were observed for trophozoites and merozoites. CONCLUSIONS: The algorithm can help facilitate the clinical and morphologic examination of malaria parasites.
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spelling pubmed-106273392023-11-07 Application of Deep Learning in Clinical Settings for Detecting and Classifying Malaria Parasites in Thin Blood Smears Wang, Geng Luo, Guoju Lian, Heqing Chen, Lei Wu, Wei Liu, Hui Open Forum Infect Dis Major Article BACKGROUND: Scarcity of annotated image data sets of thin blood smears makes expert-level differentiation among Plasmodium species challenging. Here, we aimed to establish a deep learning algorithm for identifying and classifying malaria parasites in thin blood smears and evaluate its performance and clinical prospect. METHODS: You Only Look Once v7 was used as the backbone network for training the artificial intelligence algorithm model. The training, validation, and test sets for each malaria parasite category were randomly selected. A comprehensive analysis was performed on 12 708 thin blood smear images of various infective stages of 12 546 malaria parasites, including P falciparum, P vivax, P malariae, P ovale, P knowlesi, and P cynomolgi. Peripheral blood samples were obtained from 380 patients diagnosed with malaria. Additionally, blood samples from monkeys diagnosed with malaria were used to analyze P cynomolgi. The accuracy for detecting Plasmodium-infected blood cells was assessed through various evaluation metrics. RESULTS: The total time to identify 1116 malaria parasites was 13 seconds, with an average analysis time of 0.01 seconds for each parasite in the test set. The average precision was 0.902, with a recall and precision of infected erythrocytes of 96.0% and 94.9%, respectively. Sensitivity and specificity exceeded 96.8% and 99.3%, with an area under the receiver operating characteristic curve >0.999. The highest sensitivity (97.8%) and specificity (99.8%) were observed for trophozoites and merozoites. CONCLUSIONS: The algorithm can help facilitate the clinical and morphologic examination of malaria parasites. Oxford University Press 2023-09-15 /pmc/articles/PMC10627339/ /pubmed/37937045 http://dx.doi.org/10.1093/ofid/ofad469 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Major Article
Wang, Geng
Luo, Guoju
Lian, Heqing
Chen, Lei
Wu, Wei
Liu, Hui
Application of Deep Learning in Clinical Settings for Detecting and Classifying Malaria Parasites in Thin Blood Smears
title Application of Deep Learning in Clinical Settings for Detecting and Classifying Malaria Parasites in Thin Blood Smears
title_full Application of Deep Learning in Clinical Settings for Detecting and Classifying Malaria Parasites in Thin Blood Smears
title_fullStr Application of Deep Learning in Clinical Settings for Detecting and Classifying Malaria Parasites in Thin Blood Smears
title_full_unstemmed Application of Deep Learning in Clinical Settings for Detecting and Classifying Malaria Parasites in Thin Blood Smears
title_short Application of Deep Learning in Clinical Settings for Detecting and Classifying Malaria Parasites in Thin Blood Smears
title_sort application of deep learning in clinical settings for detecting and classifying malaria parasites in thin blood smears
topic Major Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10627339/
https://www.ncbi.nlm.nih.gov/pubmed/37937045
http://dx.doi.org/10.1093/ofid/ofad469
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