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Prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma
Hepatocellular carcinoma (HCC) is the most common malignant liver tumor. It is an aggressive disease with high mortality rate. In this study, we investigated a new prognosis-related gene index (PRGI) that can predict the survival and efficacy of immunotherapy in patients with HCC. RNA-seq data and c...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Lippincott Williams & Wilkins
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10627638/ https://www.ncbi.nlm.nih.gov/pubmed/37933057 http://dx.doi.org/10.1097/MD.0000000000035820 |
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author | Du, Zhongxiang Zhang, Qi Yang, Jie |
author_facet | Du, Zhongxiang Zhang, Qi Yang, Jie |
author_sort | Du, Zhongxiang |
collection | PubMed |
description | Hepatocellular carcinoma (HCC) is the most common malignant liver tumor. It is an aggressive disease with high mortality rate. In this study, we investigated a new prognosis-related gene index (PRGI) that can predict the survival and efficacy of immunotherapy in patients with HCC. RNA-seq data and clinical data of HCC samples were obtained from the cancer genome atlas and ICGC databases. Prognosis-related genes were obtained using log-rank tests and univariate Cox proportional hazards regression. Univariate and multivariate analyses were performed on the overall survival rate of patients with prognosis-related genes and multiple clinicopathological factors, and a nomogram was constructed. A PRGI was then constructed based on least absolute shrinkage and selection operator or multivariate Cox Iterative Regression. The possible correlation between PRGI and immune cell infiltration or immunotherapy efficacy was discussed. Eight genes were identified to construct the PRGI. PRGI can predict the infiltration of immune cells into the tumor microenvironment of HCC and the response to immunotherapy. PRGI can accurately predict the survival rate of patients with HCC, reflect the immune microenvironment, and predict the efficacy of immunotherapy. |
format | Online Article Text |
id | pubmed-10627638 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Lippincott Williams & Wilkins |
record_format | MEDLINE/PubMed |
spelling | pubmed-106276382023-11-07 Prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma Du, Zhongxiang Zhang, Qi Yang, Jie Medicine (Baltimore) 5700 Hepatocellular carcinoma (HCC) is the most common malignant liver tumor. It is an aggressive disease with high mortality rate. In this study, we investigated a new prognosis-related gene index (PRGI) that can predict the survival and efficacy of immunotherapy in patients with HCC. RNA-seq data and clinical data of HCC samples were obtained from the cancer genome atlas and ICGC databases. Prognosis-related genes were obtained using log-rank tests and univariate Cox proportional hazards regression. Univariate and multivariate analyses were performed on the overall survival rate of patients with prognosis-related genes and multiple clinicopathological factors, and a nomogram was constructed. A PRGI was then constructed based on least absolute shrinkage and selection operator or multivariate Cox Iterative Regression. The possible correlation between PRGI and immune cell infiltration or immunotherapy efficacy was discussed. Eight genes were identified to construct the PRGI. PRGI can predict the infiltration of immune cells into the tumor microenvironment of HCC and the response to immunotherapy. PRGI can accurately predict the survival rate of patients with HCC, reflect the immune microenvironment, and predict the efficacy of immunotherapy. Lippincott Williams & Wilkins 2023-11-03 /pmc/articles/PMC10627638/ /pubmed/37933057 http://dx.doi.org/10.1097/MD.0000000000035820 Text en Copyright © 2023 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial License 4.0 (CCBY-NC) (https://creativecommons.org/licenses/by-nc/4.0/) , where it is permissible to download, share, remix, transform, and buildup the work provided it is properly cited. The work cannot be used commercially without permission from the journal. |
spellingShingle | 5700 Du, Zhongxiang Zhang, Qi Yang, Jie Prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma |
title | Prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma |
title_full | Prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma |
title_fullStr | Prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma |
title_full_unstemmed | Prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma |
title_short | Prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma |
title_sort | prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma |
topic | 5700 |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10627638/ https://www.ncbi.nlm.nih.gov/pubmed/37933057 http://dx.doi.org/10.1097/MD.0000000000035820 |
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