Cargando…

Prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma

Hepatocellular carcinoma (HCC) is the most common malignant liver tumor. It is an aggressive disease with high mortality rate. In this study, we investigated a new prognosis-related gene index (PRGI) that can predict the survival and efficacy of immunotherapy in patients with HCC. RNA-seq data and c...

Descripción completa

Detalles Bibliográficos
Autores principales: Du, Zhongxiang, Zhang, Qi, Yang, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10627638/
https://www.ncbi.nlm.nih.gov/pubmed/37933057
http://dx.doi.org/10.1097/MD.0000000000035820
_version_ 1785131564654395392
author Du, Zhongxiang
Zhang, Qi
Yang, Jie
author_facet Du, Zhongxiang
Zhang, Qi
Yang, Jie
author_sort Du, Zhongxiang
collection PubMed
description Hepatocellular carcinoma (HCC) is the most common malignant liver tumor. It is an aggressive disease with high mortality rate. In this study, we investigated a new prognosis-related gene index (PRGI) that can predict the survival and efficacy of immunotherapy in patients with HCC. RNA-seq data and clinical data of HCC samples were obtained from the cancer genome atlas and ICGC databases. Prognosis-related genes were obtained using log-rank tests and univariate Cox proportional hazards regression. Univariate and multivariate analyses were performed on the overall survival rate of patients with prognosis-related genes and multiple clinicopathological factors, and a nomogram was constructed. A PRGI was then constructed based on least absolute shrinkage and selection operator or multivariate Cox Iterative Regression. The possible correlation between PRGI and immune cell infiltration or immunotherapy efficacy was discussed. Eight genes were identified to construct the PRGI. PRGI can predict the infiltration of immune cells into the tumor microenvironment of HCC and the response to immunotherapy. PRGI can accurately predict the survival rate of patients with HCC, reflect the immune microenvironment, and predict the efficacy of immunotherapy.
format Online
Article
Text
id pubmed-10627638
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Lippincott Williams & Wilkins
record_format MEDLINE/PubMed
spelling pubmed-106276382023-11-07 Prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma Du, Zhongxiang Zhang, Qi Yang, Jie Medicine (Baltimore) 5700 Hepatocellular carcinoma (HCC) is the most common malignant liver tumor. It is an aggressive disease with high mortality rate. In this study, we investigated a new prognosis-related gene index (PRGI) that can predict the survival and efficacy of immunotherapy in patients with HCC. RNA-seq data and clinical data of HCC samples were obtained from the cancer genome atlas and ICGC databases. Prognosis-related genes were obtained using log-rank tests and univariate Cox proportional hazards regression. Univariate and multivariate analyses were performed on the overall survival rate of patients with prognosis-related genes and multiple clinicopathological factors, and a nomogram was constructed. A PRGI was then constructed based on least absolute shrinkage and selection operator or multivariate Cox Iterative Regression. The possible correlation between PRGI and immune cell infiltration or immunotherapy efficacy was discussed. Eight genes were identified to construct the PRGI. PRGI can predict the infiltration of immune cells into the tumor microenvironment of HCC and the response to immunotherapy. PRGI can accurately predict the survival rate of patients with HCC, reflect the immune microenvironment, and predict the efficacy of immunotherapy. Lippincott Williams & Wilkins 2023-11-03 /pmc/articles/PMC10627638/ /pubmed/37933057 http://dx.doi.org/10.1097/MD.0000000000035820 Text en Copyright © 2023 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial License 4.0 (CCBY-NC) (https://creativecommons.org/licenses/by-nc/4.0/) , where it is permissible to download, share, remix, transform, and buildup the work provided it is properly cited. The work cannot be used commercially without permission from the journal.
spellingShingle 5700
Du, Zhongxiang
Zhang, Qi
Yang, Jie
Prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma
title Prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma
title_full Prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma
title_fullStr Prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma
title_full_unstemmed Prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma
title_short Prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma
title_sort prognostic related gene index for predicting survival and immunotherapeutic effect of hepatocellular carcinoma
topic 5700
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10627638/
https://www.ncbi.nlm.nih.gov/pubmed/37933057
http://dx.doi.org/10.1097/MD.0000000000035820
work_keys_str_mv AT duzhongxiang prognosticrelatedgeneindexforpredictingsurvivalandimmunotherapeuticeffectofhepatocellularcarcinoma
AT zhangqi prognosticrelatedgeneindexforpredictingsurvivalandimmunotherapeuticeffectofhepatocellularcarcinoma
AT yangjie prognosticrelatedgeneindexforpredictingsurvivalandimmunotherapeuticeffectofhepatocellularcarcinoma