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OIMHS: An Optical Coherence Tomography Image Dataset Based on Macular Hole Manual Segmentation

Macular holes, one of the most common macular diseases, require timely treatment. The morphological changes on optical coherence tomography (OCT) images provided an opportunity for direct observation of the disease, and accurate segmentation was needed to identify and quantify the lesions. Developme...

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Autores principales: Ye, Xin, He, Shucheng, Zhong, Xiaxing, Yu, Jiafeng, Yang, Shangchao, Shen, Yingjiao, Chen, Yiqi, Wang, Yaqi, Huang, Xingru, Shen, Lijun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10628143/
https://www.ncbi.nlm.nih.gov/pubmed/37932307
http://dx.doi.org/10.1038/s41597-023-02675-1
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author Ye, Xin
He, Shucheng
Zhong, Xiaxing
Yu, Jiafeng
Yang, Shangchao
Shen, Yingjiao
Chen, Yiqi
Wang, Yaqi
Huang, Xingru
Shen, Lijun
author_facet Ye, Xin
He, Shucheng
Zhong, Xiaxing
Yu, Jiafeng
Yang, Shangchao
Shen, Yingjiao
Chen, Yiqi
Wang, Yaqi
Huang, Xingru
Shen, Lijun
author_sort Ye, Xin
collection PubMed
description Macular holes, one of the most common macular diseases, require timely treatment. The morphological changes on optical coherence tomography (OCT) images provided an opportunity for direct observation of the disease, and accurate segmentation was needed to identify and quantify the lesions. Developments of such algorithms had been obstructed by a lack of high-quality datasets (the OCT images and the corresponding gold standard macular hole segmentation labels), especially for supervised learning-based segmentation algorithms. In such context, we established a large OCT image macular hole segmentation (OIMHS) dataset with 3859 B-scan images of 119 patients, and each image provided four segmentation labels: retina, macular hole, intraretinal cysts, and choroid. This dataset offered an excellent opportunity for investigating the accuracy and reliability of different segmentation algorithms for macular holes and a new research insight into the further development of clinical research for macular diseases, which included the retina, lesions, and choroid in quantitative analyses.
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spelling pubmed-106281432023-11-08 OIMHS: An Optical Coherence Tomography Image Dataset Based on Macular Hole Manual Segmentation Ye, Xin He, Shucheng Zhong, Xiaxing Yu, Jiafeng Yang, Shangchao Shen, Yingjiao Chen, Yiqi Wang, Yaqi Huang, Xingru Shen, Lijun Sci Data Data Descriptor Macular holes, one of the most common macular diseases, require timely treatment. The morphological changes on optical coherence tomography (OCT) images provided an opportunity for direct observation of the disease, and accurate segmentation was needed to identify and quantify the lesions. Developments of such algorithms had been obstructed by a lack of high-quality datasets (the OCT images and the corresponding gold standard macular hole segmentation labels), especially for supervised learning-based segmentation algorithms. In such context, we established a large OCT image macular hole segmentation (OIMHS) dataset with 3859 B-scan images of 119 patients, and each image provided four segmentation labels: retina, macular hole, intraretinal cysts, and choroid. This dataset offered an excellent opportunity for investigating the accuracy and reliability of different segmentation algorithms for macular holes and a new research insight into the further development of clinical research for macular diseases, which included the retina, lesions, and choroid in quantitative analyses. Nature Publishing Group UK 2023-11-06 /pmc/articles/PMC10628143/ /pubmed/37932307 http://dx.doi.org/10.1038/s41597-023-02675-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Ye, Xin
He, Shucheng
Zhong, Xiaxing
Yu, Jiafeng
Yang, Shangchao
Shen, Yingjiao
Chen, Yiqi
Wang, Yaqi
Huang, Xingru
Shen, Lijun
OIMHS: An Optical Coherence Tomography Image Dataset Based on Macular Hole Manual Segmentation
title OIMHS: An Optical Coherence Tomography Image Dataset Based on Macular Hole Manual Segmentation
title_full OIMHS: An Optical Coherence Tomography Image Dataset Based on Macular Hole Manual Segmentation
title_fullStr OIMHS: An Optical Coherence Tomography Image Dataset Based on Macular Hole Manual Segmentation
title_full_unstemmed OIMHS: An Optical Coherence Tomography Image Dataset Based on Macular Hole Manual Segmentation
title_short OIMHS: An Optical Coherence Tomography Image Dataset Based on Macular Hole Manual Segmentation
title_sort oimhs: an optical coherence tomography image dataset based on macular hole manual segmentation
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10628143/
https://www.ncbi.nlm.nih.gov/pubmed/37932307
http://dx.doi.org/10.1038/s41597-023-02675-1
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