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Prognostic and immunotherapeutic significance of immunogenic cell death-related genes in colon adenocarcinoma patients

In recent years, genes associated with immunogenic cell death (ICD)-related genes have garnered significant interest as potential targets for immunotherapy. As a frontier in cancer treatment, immunotherapy has notably enhanced the therapeutic outcomes for cancer patients. However, since only a subse...

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Autores principales: Xu, Jun, Yang, Jun, Pan, Xianzhu, Wang, Jian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10628212/
https://www.ncbi.nlm.nih.gov/pubmed/37932362
http://dx.doi.org/10.1038/s41598-023-46675-y
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author Xu, Jun
Yang, Jun
Pan, Xianzhu
Wang, Jian
author_facet Xu, Jun
Yang, Jun
Pan, Xianzhu
Wang, Jian
author_sort Xu, Jun
collection PubMed
description In recent years, genes associated with immunogenic cell death (ICD)-related genes have garnered significant interest as potential targets for immunotherapy. As a frontier in cancer treatment, immunotherapy has notably enhanced the therapeutic outcomes for cancer patients. However, since only a subset of patients benefits from this treatment approach, there is an imperative need for biomarker research to enhance patient sensitivity to immunotherapy. Expression of ICD-related genes and clinical patient data were sourced from The Cancer Genome Atlas (TCGA) database. Utilizing univariate Cox regression analysis, we constructed a signature for predicting the overall survival of colon adenocarcinoma (COAD) patients. A genomic feature analysis was performed, incorporating tumor mutation burden (TMB) and copy number variation (CNV). The immunological characteristics were analyzed via the ssGSEA and GSEA algorithms, with the resulting data visualized using R software (version 4.2.1). According to the univariate regression analysis for COAD, AIM2 emerged as the gene most significantly associated with overall survival among the 32 ICD-related genes in the TCGA dataset. Patients were divided into two groups based on high or low AIM2 expression, and genomic differences between the groups were explored. Patients expressing high levels of AIM2 had a higher TMB and a lower CNV. In addition, these patients had elevated immune checkpoint, immune cell, and immune function scores, thus indicating increased sensitivity to immunotherapy. TIDE analysis further confirmed that these patients were likely to respond more effectively to immunotherapy. Subclass mapping analysis corroborated our findings, demonstrating that patients with high AIM2 expression responded more positively to immunotherapy. Additionally, our study found that the suppression of AIM2 could significantly enhance the proliferation, invasion, and migration capabilities of colon cancer cells. In this research, we identified a novel prognostic signature suggesting that patients with higher AIM2 expression levels are more likely to respond favorably to immunotherapy.
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spelling pubmed-106282122023-11-08 Prognostic and immunotherapeutic significance of immunogenic cell death-related genes in colon adenocarcinoma patients Xu, Jun Yang, Jun Pan, Xianzhu Wang, Jian Sci Rep Article In recent years, genes associated with immunogenic cell death (ICD)-related genes have garnered significant interest as potential targets for immunotherapy. As a frontier in cancer treatment, immunotherapy has notably enhanced the therapeutic outcomes for cancer patients. However, since only a subset of patients benefits from this treatment approach, there is an imperative need for biomarker research to enhance patient sensitivity to immunotherapy. Expression of ICD-related genes and clinical patient data were sourced from The Cancer Genome Atlas (TCGA) database. Utilizing univariate Cox regression analysis, we constructed a signature for predicting the overall survival of colon adenocarcinoma (COAD) patients. A genomic feature analysis was performed, incorporating tumor mutation burden (TMB) and copy number variation (CNV). The immunological characteristics were analyzed via the ssGSEA and GSEA algorithms, with the resulting data visualized using R software (version 4.2.1). According to the univariate regression analysis for COAD, AIM2 emerged as the gene most significantly associated with overall survival among the 32 ICD-related genes in the TCGA dataset. Patients were divided into two groups based on high or low AIM2 expression, and genomic differences between the groups were explored. Patients expressing high levels of AIM2 had a higher TMB and a lower CNV. In addition, these patients had elevated immune checkpoint, immune cell, and immune function scores, thus indicating increased sensitivity to immunotherapy. TIDE analysis further confirmed that these patients were likely to respond more effectively to immunotherapy. Subclass mapping analysis corroborated our findings, demonstrating that patients with high AIM2 expression responded more positively to immunotherapy. Additionally, our study found that the suppression of AIM2 could significantly enhance the proliferation, invasion, and migration capabilities of colon cancer cells. In this research, we identified a novel prognostic signature suggesting that patients with higher AIM2 expression levels are more likely to respond favorably to immunotherapy. Nature Publishing Group UK 2023-11-06 /pmc/articles/PMC10628212/ /pubmed/37932362 http://dx.doi.org/10.1038/s41598-023-46675-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Xu, Jun
Yang, Jun
Pan, Xianzhu
Wang, Jian
Prognostic and immunotherapeutic significance of immunogenic cell death-related genes in colon adenocarcinoma patients
title Prognostic and immunotherapeutic significance of immunogenic cell death-related genes in colon adenocarcinoma patients
title_full Prognostic and immunotherapeutic significance of immunogenic cell death-related genes in colon adenocarcinoma patients
title_fullStr Prognostic and immunotherapeutic significance of immunogenic cell death-related genes in colon adenocarcinoma patients
title_full_unstemmed Prognostic and immunotherapeutic significance of immunogenic cell death-related genes in colon adenocarcinoma patients
title_short Prognostic and immunotherapeutic significance of immunogenic cell death-related genes in colon adenocarcinoma patients
title_sort prognostic and immunotherapeutic significance of immunogenic cell death-related genes in colon adenocarcinoma patients
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10628212/
https://www.ncbi.nlm.nih.gov/pubmed/37932362
http://dx.doi.org/10.1038/s41598-023-46675-y
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