Cargando…
SPOP regulates the expression profiles and alternative splicing events in human hepatocytes
Speckle type BTB/POZ protein (SPOP) may have cancer promoting or inhibiting effects. At present, the role of SPOP in hepatocellular carcinoma (HCC) has rarely been studied. In this study, to investigate the effects of SPOP in HCC and elucidate the underlying molecular mechanisms of its relationship...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
De Gruyter
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10628592/ https://www.ncbi.nlm.nih.gov/pubmed/37941785 http://dx.doi.org/10.1515/biol-2022-0755 |
_version_ | 1785131792745889792 |
---|---|
author | Dai, Jing Dong, Xiang Chen, Yuxin Xue, Wanying Wang, Qingqing Shang, Feifei Zhao, Yunxia Li, Shujing Gao, Yu Wang, Yuanyuan |
author_facet | Dai, Jing Dong, Xiang Chen, Yuxin Xue, Wanying Wang, Qingqing Shang, Feifei Zhao, Yunxia Li, Shujing Gao, Yu Wang, Yuanyuan |
author_sort | Dai, Jing |
collection | PubMed |
description | Speckle type BTB/POZ protein (SPOP) may have cancer promoting or inhibiting effects. At present, the role of SPOP in hepatocellular carcinoma (HCC) has rarely been studied. In this study, to investigate the effects of SPOP in HCC and elucidate the underlying molecular mechanisms of its relationship with genes, differentially expressed genes (DEGs) were classified through RNA sequencing. The gene ontology analysis and Kyoto Encyclopedia of Genes and Genomes functional pathway analysis were used to further predict the function of DEGs after the overexpression of SPOP. The biological function of SPOP-regulated alternative splicing events in cells is comprehensively assessed. The Cancer Genome Atlas database and Gene Expression Omnibus dataset were performed to evaluate the correlation between SPOP and HCC progression. Due to SPOP overexpression, 56 DEGs in the HCC related pathway were further identified. The results showed that SPOP overexpression facilitated the cell proliferation and changed the gene expression profiles of human normal hepatocytes. SPOP-regulated alternative splicing events were involved in pathways associated with cellular processes, metabolism, environmental information procession, organismal systems, and so on. In conclusion, SPOP may potentially exhibit tumor-promoting effects, necessitating further investigations to unveil its molecular mechanisms comprehensively. |
format | Online Article Text |
id | pubmed-10628592 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | De Gruyter |
record_format | MEDLINE/PubMed |
spelling | pubmed-106285922023-11-08 SPOP regulates the expression profiles and alternative splicing events in human hepatocytes Dai, Jing Dong, Xiang Chen, Yuxin Xue, Wanying Wang, Qingqing Shang, Feifei Zhao, Yunxia Li, Shujing Gao, Yu Wang, Yuanyuan Open Life Sci Research Article Speckle type BTB/POZ protein (SPOP) may have cancer promoting or inhibiting effects. At present, the role of SPOP in hepatocellular carcinoma (HCC) has rarely been studied. In this study, to investigate the effects of SPOP in HCC and elucidate the underlying molecular mechanisms of its relationship with genes, differentially expressed genes (DEGs) were classified through RNA sequencing. The gene ontology analysis and Kyoto Encyclopedia of Genes and Genomes functional pathway analysis were used to further predict the function of DEGs after the overexpression of SPOP. The biological function of SPOP-regulated alternative splicing events in cells is comprehensively assessed. The Cancer Genome Atlas database and Gene Expression Omnibus dataset were performed to evaluate the correlation between SPOP and HCC progression. Due to SPOP overexpression, 56 DEGs in the HCC related pathway were further identified. The results showed that SPOP overexpression facilitated the cell proliferation and changed the gene expression profiles of human normal hepatocytes. SPOP-regulated alternative splicing events were involved in pathways associated with cellular processes, metabolism, environmental information procession, organismal systems, and so on. In conclusion, SPOP may potentially exhibit tumor-promoting effects, necessitating further investigations to unveil its molecular mechanisms comprehensively. De Gruyter 2023-10-24 /pmc/articles/PMC10628592/ /pubmed/37941785 http://dx.doi.org/10.1515/biol-2022-0755 Text en © 2023 the author(s), published by De Gruyter https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. |
spellingShingle | Research Article Dai, Jing Dong, Xiang Chen, Yuxin Xue, Wanying Wang, Qingqing Shang, Feifei Zhao, Yunxia Li, Shujing Gao, Yu Wang, Yuanyuan SPOP regulates the expression profiles and alternative splicing events in human hepatocytes |
title | SPOP regulates the expression profiles and alternative splicing events in human hepatocytes |
title_full | SPOP regulates the expression profiles and alternative splicing events in human hepatocytes |
title_fullStr | SPOP regulates the expression profiles and alternative splicing events in human hepatocytes |
title_full_unstemmed | SPOP regulates the expression profiles and alternative splicing events in human hepatocytes |
title_short | SPOP regulates the expression profiles and alternative splicing events in human hepatocytes |
title_sort | spop regulates the expression profiles and alternative splicing events in human hepatocytes |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10628592/ https://www.ncbi.nlm.nih.gov/pubmed/37941785 http://dx.doi.org/10.1515/biol-2022-0755 |
work_keys_str_mv | AT daijing spopregulatestheexpressionprofilesandalternativesplicingeventsinhumanhepatocytes AT dongxiang spopregulatestheexpressionprofilesandalternativesplicingeventsinhumanhepatocytes AT chenyuxin spopregulatestheexpressionprofilesandalternativesplicingeventsinhumanhepatocytes AT xuewanying spopregulatestheexpressionprofilesandalternativesplicingeventsinhumanhepatocytes AT wangqingqing spopregulatestheexpressionprofilesandalternativesplicingeventsinhumanhepatocytes AT shangfeifei spopregulatestheexpressionprofilesandalternativesplicingeventsinhumanhepatocytes AT zhaoyunxia spopregulatestheexpressionprofilesandalternativesplicingeventsinhumanhepatocytes AT lishujing spopregulatestheexpressionprofilesandalternativesplicingeventsinhumanhepatocytes AT gaoyu spopregulatestheexpressionprofilesandalternativesplicingeventsinhumanhepatocytes AT wangyuanyuan spopregulatestheexpressionprofilesandalternativesplicingeventsinhumanhepatocytes |