Fast and robust metagenomic sequence comparison through sparse chaining with skani

Sequence comparison tools for metagenome-assembled genomes (MAGs) struggle with high-volume or low-quality data. We present skani (https://github.com/bluenote-1577/skani), a method for determining average nucleotide identity (ANI) via sparse approximate alignments. skani outperforms FastANI in accur...

Descripción completa

Detalles Bibliográficos
Autores principales: Shaw, Jim, Yu, Yun William
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group US 2023
Materias:
Brief Communication
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10630134/
https://www.ncbi.nlm.nih.gov/pubmed/37735570
http://dx.doi.org/10.1038/s41592-023-02018-3

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10630134/
https://www.ncbi.nlm.nih.gov/pubmed/37735570
http://dx.doi.org/10.1038/s41592-023-02018-3

Ejemplares similares