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Handling DNA malfunctions by unsupervised machine learning model

The cell cycle is a rich field for research, especially, the DNA damage. DNA damage, which happened naturally or as a result of environmental influences causes change in the chemical structure of DNA. The extent of DNA damage has a significant impact on the fate of the cell in later stages. In this...

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Autores principales: Khazaaleh, Mutaz Kh., Alsharaiah, Mohammad A., Alsharafat, Wafa, Abu-Shareha, Ahmad Adel, Haziemeh, Feras A., Al-Nawashi, Malek M., abu alhija, Mwaffaq
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10630639/
https://www.ncbi.nlm.nih.gov/pubmed/38028128
http://dx.doi.org/10.1016/j.jpi.2023.100340
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author Khazaaleh, Mutaz Kh.
Alsharaiah, Mohammad A.
Alsharafat, Wafa
Abu-Shareha, Ahmad Adel
Haziemeh, Feras A.
Al-Nawashi, Malek M.
abu alhija, Mwaffaq
author_facet Khazaaleh, Mutaz Kh.
Alsharaiah, Mohammad A.
Alsharafat, Wafa
Abu-Shareha, Ahmad Adel
Haziemeh, Feras A.
Al-Nawashi, Malek M.
abu alhija, Mwaffaq
author_sort Khazaaleh, Mutaz Kh.
collection PubMed
description The cell cycle is a rich field for research, especially, the DNA damage. DNA damage, which happened naturally or as a result of environmental influences causes change in the chemical structure of DNA. The extent of DNA damage has a significant impact on the fate of the cell in later stages. In this paper, we introduced an Unsupervised Machine learning Model for DNA Damage Diagnosis and Analysis. Mainly, we employed K-means clustering unsupervised machine learning algorithms. Unsupervised algorithms commonly draw conclusions from datasets by solely utilizing input vectors, disregarding any known or labeled outcomes. The model provided deep insight about DNA damage and exposes the protein levels for proteins when work together in sub-network model to deal with DNA damage occurrence, the unsupervised artificial model explained the sub-network biological model activities in regard to the changing in their concentrations in several clusters, they have been grouped in such as (0 - no damage, 1 - low, 2 - medium, 3 - high, and 4 - excess) DNA damage clusters. The results provided a rational and persuasive explanation for numerous important phenomena, including the oscillation of the protein p53, in a clear and understandable manner. Which is encouraging since it demonstrates that the K-means clustering approach can be easily applied to many similar biological systems, which aids in better understanding the key dynamics of these systems.
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spelling pubmed-106306392023-10-17 Handling DNA malfunctions by unsupervised machine learning model Khazaaleh, Mutaz Kh. Alsharaiah, Mohammad A. Alsharafat, Wafa Abu-Shareha, Ahmad Adel Haziemeh, Feras A. Al-Nawashi, Malek M. abu alhija, Mwaffaq J Pathol Inform Original Research Article The cell cycle is a rich field for research, especially, the DNA damage. DNA damage, which happened naturally or as a result of environmental influences causes change in the chemical structure of DNA. The extent of DNA damage has a significant impact on the fate of the cell in later stages. In this paper, we introduced an Unsupervised Machine learning Model for DNA Damage Diagnosis and Analysis. Mainly, we employed K-means clustering unsupervised machine learning algorithms. Unsupervised algorithms commonly draw conclusions from datasets by solely utilizing input vectors, disregarding any known or labeled outcomes. The model provided deep insight about DNA damage and exposes the protein levels for proteins when work together in sub-network model to deal with DNA damage occurrence, the unsupervised artificial model explained the sub-network biological model activities in regard to the changing in their concentrations in several clusters, they have been grouped in such as (0 - no damage, 1 - low, 2 - medium, 3 - high, and 4 - excess) DNA damage clusters. The results provided a rational and persuasive explanation for numerous important phenomena, including the oscillation of the protein p53, in a clear and understandable manner. Which is encouraging since it demonstrates that the K-means clustering approach can be easily applied to many similar biological systems, which aids in better understanding the key dynamics of these systems. Elsevier 2023-10-17 /pmc/articles/PMC10630639/ /pubmed/38028128 http://dx.doi.org/10.1016/j.jpi.2023.100340 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Research Article
Khazaaleh, Mutaz Kh.
Alsharaiah, Mohammad A.
Alsharafat, Wafa
Abu-Shareha, Ahmad Adel
Haziemeh, Feras A.
Al-Nawashi, Malek M.
abu alhija, Mwaffaq
Handling DNA malfunctions by unsupervised machine learning model
title Handling DNA malfunctions by unsupervised machine learning model
title_full Handling DNA malfunctions by unsupervised machine learning model
title_fullStr Handling DNA malfunctions by unsupervised machine learning model
title_full_unstemmed Handling DNA malfunctions by unsupervised machine learning model
title_short Handling DNA malfunctions by unsupervised machine learning model
title_sort handling dna malfunctions by unsupervised machine learning model
topic Original Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10630639/
https://www.ncbi.nlm.nih.gov/pubmed/38028128
http://dx.doi.org/10.1016/j.jpi.2023.100340
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