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Biocatalytic reductive amination as a route to isotopically labelled amino acids suitable for analysis of large proteins by NMR

We demonstrate an atom-efficient and easy to use H(2)-driven biocatalytic platform for the enantioselective incorporation of (2)H-atoms into amino acids. By combining the biocatalytic deuteration catalyst with amino acid dehydrogenase enzymes capable of reductive amination, we synthesised a library...

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Autores principales: Rowbotham, Jack S., Nicholson, Jake H., Ramirez, Miguel A., Urata, Kouji, Todd, Peter M. T., Karunanithy, Gogulan, Lauterbach, Lars, Reeve, Holly A., Baldwin, Andrew J., Vincent, Kylie A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10631221/
https://www.ncbi.nlm.nih.gov/pubmed/37969586
http://dx.doi.org/10.1039/d3sc01718d
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author Rowbotham, Jack S.
Nicholson, Jake H.
Ramirez, Miguel A.
Urata, Kouji
Todd, Peter M. T.
Karunanithy, Gogulan
Lauterbach, Lars
Reeve, Holly A.
Baldwin, Andrew J.
Vincent, Kylie A.
author_facet Rowbotham, Jack S.
Nicholson, Jake H.
Ramirez, Miguel A.
Urata, Kouji
Todd, Peter M. T.
Karunanithy, Gogulan
Lauterbach, Lars
Reeve, Holly A.
Baldwin, Andrew J.
Vincent, Kylie A.
author_sort Rowbotham, Jack S.
collection PubMed
description We demonstrate an atom-efficient and easy to use H(2)-driven biocatalytic platform for the enantioselective incorporation of (2)H-atoms into amino acids. By combining the biocatalytic deuteration catalyst with amino acid dehydrogenase enzymes capable of reductive amination, we synthesised a library of multiply isotopically labelled amino acids from low-cost isotopic precursors, such as (2)H(2)O and (15)NH(4)(+). The chosen approach avoids the use of pre-labeled (2)H-reducing agents, and therefore vastly simplifies product cleanup. Notably, this strategy enables (2)H, (15)N, and an asymmetric centre to be introduced at a molecular site in a single step, with full selectivity, under benign conditions, and with near 100% atom economy. The method facilitates the preparation of amino acid isotopologues on a half-gram scale. These amino acids have wide applicability in the analytical life sciences, and in particular for NMR spectroscopic analysis of proteins. To demonstrate the benefits of the approach for enabling the workflow of protein NMR chemists, we prepared l-[α-(2)H,(15)N, β-(13)C]-alanine and integrated it into a large (>400 kDa) heat-shock protein oligomer, which was subsequently analysable by methyl-TROSY techniques, revealing new structural information.
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spelling pubmed-106312212023-11-15 Biocatalytic reductive amination as a route to isotopically labelled amino acids suitable for analysis of large proteins by NMR Rowbotham, Jack S. Nicholson, Jake H. Ramirez, Miguel A. Urata, Kouji Todd, Peter M. T. Karunanithy, Gogulan Lauterbach, Lars Reeve, Holly A. Baldwin, Andrew J. Vincent, Kylie A. Chem Sci Chemistry We demonstrate an atom-efficient and easy to use H(2)-driven biocatalytic platform for the enantioselective incorporation of (2)H-atoms into amino acids. By combining the biocatalytic deuteration catalyst with amino acid dehydrogenase enzymes capable of reductive amination, we synthesised a library of multiply isotopically labelled amino acids from low-cost isotopic precursors, such as (2)H(2)O and (15)NH(4)(+). The chosen approach avoids the use of pre-labeled (2)H-reducing agents, and therefore vastly simplifies product cleanup. Notably, this strategy enables (2)H, (15)N, and an asymmetric centre to be introduced at a molecular site in a single step, with full selectivity, under benign conditions, and with near 100% atom economy. The method facilitates the preparation of amino acid isotopologues on a half-gram scale. These amino acids have wide applicability in the analytical life sciences, and in particular for NMR spectroscopic analysis of proteins. To demonstrate the benefits of the approach for enabling the workflow of protein NMR chemists, we prepared l-[α-(2)H,(15)N, β-(13)C]-alanine and integrated it into a large (>400 kDa) heat-shock protein oligomer, which was subsequently analysable by methyl-TROSY techniques, revealing new structural information. The Royal Society of Chemistry 2023-10-26 /pmc/articles/PMC10631221/ /pubmed/37969586 http://dx.doi.org/10.1039/d3sc01718d Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/
spellingShingle Chemistry
Rowbotham, Jack S.
Nicholson, Jake H.
Ramirez, Miguel A.
Urata, Kouji
Todd, Peter M. T.
Karunanithy, Gogulan
Lauterbach, Lars
Reeve, Holly A.
Baldwin, Andrew J.
Vincent, Kylie A.
Biocatalytic reductive amination as a route to isotopically labelled amino acids suitable for analysis of large proteins by NMR
title Biocatalytic reductive amination as a route to isotopically labelled amino acids suitable for analysis of large proteins by NMR
title_full Biocatalytic reductive amination as a route to isotopically labelled amino acids suitable for analysis of large proteins by NMR
title_fullStr Biocatalytic reductive amination as a route to isotopically labelled amino acids suitable for analysis of large proteins by NMR
title_full_unstemmed Biocatalytic reductive amination as a route to isotopically labelled amino acids suitable for analysis of large proteins by NMR
title_short Biocatalytic reductive amination as a route to isotopically labelled amino acids suitable for analysis of large proteins by NMR
title_sort biocatalytic reductive amination as a route to isotopically labelled amino acids suitable for analysis of large proteins by nmr
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10631221/
https://www.ncbi.nlm.nih.gov/pubmed/37969586
http://dx.doi.org/10.1039/d3sc01718d
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