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The role of pyroptosis-related genes in the diagnosis and subclassification of sepsis
Pyroptosis is a new form of programmed cell death recognized as crucial in developing sepsis. However, there is limited research on the mechanism of pyroptosis-related genes in sepsis-related from the Gene Expression Omnibus (GEO) database and standardized. The expression levels of pyroptosis-relate...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10631697/ https://www.ncbi.nlm.nih.gov/pubmed/37939116 http://dx.doi.org/10.1371/journal.pone.0293537 |
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author | Ding, Wencong Huang, Laping Wu, Yifeng Su, Junwei He, Liu Tang, Zhongxiang Zhang, Min |
author_facet | Ding, Wencong Huang, Laping Wu, Yifeng Su, Junwei He, Liu Tang, Zhongxiang Zhang, Min |
author_sort | Ding, Wencong |
collection | PubMed |
description | Pyroptosis is a new form of programmed cell death recognized as crucial in developing sepsis. However, there is limited research on the mechanism of pyroptosis-related genes in sepsis-related from the Gene Expression Omnibus (GEO) database and standardized. The expression levels of pyroptosis-related genes were extracted, and differential expression analysis was conducted. A prediction model was constructed using random forest (RF), support vector machine (SVM), weighted gene co-expression new analysis (WGCNA), and nomogram techniques to assess the risk of sepsis. The relationship between pyroptosis-related subgroups and the immune microenvironment and inflammatory factors was studied using consistent clustering algorithms, principal component analysis (PCA), single-sample genomic enrichment analysis (ssGSEA), and immune infiltration. A risk prediction model based on 3 PRGs has been constructed and can effectively predict the risk of sepsis. Patients with sepsis can be divided into two completely different subtypes of pyroptosis-related clusters. Cluster B is highly correlated with the lower proportion of Th17 celld and has lower levels of expression of inflammatory factors. This study utilizes mechanical learning methods to further investigate the pathogenesis of sepsis, explore potential biomarkers, provide effective molecular targets for its diagnosis and treatment of sepsis. |
format | Online Article Text |
id | pubmed-10631697 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-106316972023-11-08 The role of pyroptosis-related genes in the diagnosis and subclassification of sepsis Ding, Wencong Huang, Laping Wu, Yifeng Su, Junwei He, Liu Tang, Zhongxiang Zhang, Min PLoS One Research Article Pyroptosis is a new form of programmed cell death recognized as crucial in developing sepsis. However, there is limited research on the mechanism of pyroptosis-related genes in sepsis-related from the Gene Expression Omnibus (GEO) database and standardized. The expression levels of pyroptosis-related genes were extracted, and differential expression analysis was conducted. A prediction model was constructed using random forest (RF), support vector machine (SVM), weighted gene co-expression new analysis (WGCNA), and nomogram techniques to assess the risk of sepsis. The relationship between pyroptosis-related subgroups and the immune microenvironment and inflammatory factors was studied using consistent clustering algorithms, principal component analysis (PCA), single-sample genomic enrichment analysis (ssGSEA), and immune infiltration. A risk prediction model based on 3 PRGs has been constructed and can effectively predict the risk of sepsis. Patients with sepsis can be divided into two completely different subtypes of pyroptosis-related clusters. Cluster B is highly correlated with the lower proportion of Th17 celld and has lower levels of expression of inflammatory factors. This study utilizes mechanical learning methods to further investigate the pathogenesis of sepsis, explore potential biomarkers, provide effective molecular targets for its diagnosis and treatment of sepsis. Public Library of Science 2023-11-08 /pmc/articles/PMC10631697/ /pubmed/37939116 http://dx.doi.org/10.1371/journal.pone.0293537 Text en © 2023 Ding et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Ding, Wencong Huang, Laping Wu, Yifeng Su, Junwei He, Liu Tang, Zhongxiang Zhang, Min The role of pyroptosis-related genes in the diagnosis and subclassification of sepsis |
title | The role of pyroptosis-related genes in the diagnosis and subclassification of sepsis |
title_full | The role of pyroptosis-related genes in the diagnosis and subclassification of sepsis |
title_fullStr | The role of pyroptosis-related genes in the diagnosis and subclassification of sepsis |
title_full_unstemmed | The role of pyroptosis-related genes in the diagnosis and subclassification of sepsis |
title_short | The role of pyroptosis-related genes in the diagnosis and subclassification of sepsis |
title_sort | role of pyroptosis-related genes in the diagnosis and subclassification of sepsis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10631697/ https://www.ncbi.nlm.nih.gov/pubmed/37939116 http://dx.doi.org/10.1371/journal.pone.0293537 |
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