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The role of pyroptosis-related genes in the diagnosis and subclassification of sepsis

Pyroptosis is a new form of programmed cell death recognized as crucial in developing sepsis. However, there is limited research on the mechanism of pyroptosis-related genes in sepsis-related from the Gene Expression Omnibus (GEO) database and standardized. The expression levels of pyroptosis-relate...

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Autores principales: Ding, Wencong, Huang, Laping, Wu, Yifeng, Su, Junwei, He, Liu, Tang, Zhongxiang, Zhang, Min
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10631697/
https://www.ncbi.nlm.nih.gov/pubmed/37939116
http://dx.doi.org/10.1371/journal.pone.0293537
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author Ding, Wencong
Huang, Laping
Wu, Yifeng
Su, Junwei
He, Liu
Tang, Zhongxiang
Zhang, Min
author_facet Ding, Wencong
Huang, Laping
Wu, Yifeng
Su, Junwei
He, Liu
Tang, Zhongxiang
Zhang, Min
author_sort Ding, Wencong
collection PubMed
description Pyroptosis is a new form of programmed cell death recognized as crucial in developing sepsis. However, there is limited research on the mechanism of pyroptosis-related genes in sepsis-related from the Gene Expression Omnibus (GEO) database and standardized. The expression levels of pyroptosis-related genes were extracted, and differential expression analysis was conducted. A prediction model was constructed using random forest (RF), support vector machine (SVM), weighted gene co-expression new analysis (WGCNA), and nomogram techniques to assess the risk of sepsis. The relationship between pyroptosis-related subgroups and the immune microenvironment and inflammatory factors was studied using consistent clustering algorithms, principal component analysis (PCA), single-sample genomic enrichment analysis (ssGSEA), and immune infiltration. A risk prediction model based on 3 PRGs has been constructed and can effectively predict the risk of sepsis. Patients with sepsis can be divided into two completely different subtypes of pyroptosis-related clusters. Cluster B is highly correlated with the lower proportion of Th17 celld and has lower levels of expression of inflammatory factors. This study utilizes mechanical learning methods to further investigate the pathogenesis of sepsis, explore potential biomarkers, provide effective molecular targets for its diagnosis and treatment of sepsis.
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spelling pubmed-106316972023-11-08 The role of pyroptosis-related genes in the diagnosis and subclassification of sepsis Ding, Wencong Huang, Laping Wu, Yifeng Su, Junwei He, Liu Tang, Zhongxiang Zhang, Min PLoS One Research Article Pyroptosis is a new form of programmed cell death recognized as crucial in developing sepsis. However, there is limited research on the mechanism of pyroptosis-related genes in sepsis-related from the Gene Expression Omnibus (GEO) database and standardized. The expression levels of pyroptosis-related genes were extracted, and differential expression analysis was conducted. A prediction model was constructed using random forest (RF), support vector machine (SVM), weighted gene co-expression new analysis (WGCNA), and nomogram techniques to assess the risk of sepsis. The relationship between pyroptosis-related subgroups and the immune microenvironment and inflammatory factors was studied using consistent clustering algorithms, principal component analysis (PCA), single-sample genomic enrichment analysis (ssGSEA), and immune infiltration. A risk prediction model based on 3 PRGs has been constructed and can effectively predict the risk of sepsis. Patients with sepsis can be divided into two completely different subtypes of pyroptosis-related clusters. Cluster B is highly correlated with the lower proportion of Th17 celld and has lower levels of expression of inflammatory factors. This study utilizes mechanical learning methods to further investigate the pathogenesis of sepsis, explore potential biomarkers, provide effective molecular targets for its diagnosis and treatment of sepsis. Public Library of Science 2023-11-08 /pmc/articles/PMC10631697/ /pubmed/37939116 http://dx.doi.org/10.1371/journal.pone.0293537 Text en © 2023 Ding et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ding, Wencong
Huang, Laping
Wu, Yifeng
Su, Junwei
He, Liu
Tang, Zhongxiang
Zhang, Min
The role of pyroptosis-related genes in the diagnosis and subclassification of sepsis
title The role of pyroptosis-related genes in the diagnosis and subclassification of sepsis
title_full The role of pyroptosis-related genes in the diagnosis and subclassification of sepsis
title_fullStr The role of pyroptosis-related genes in the diagnosis and subclassification of sepsis
title_full_unstemmed The role of pyroptosis-related genes in the diagnosis and subclassification of sepsis
title_short The role of pyroptosis-related genes in the diagnosis and subclassification of sepsis
title_sort role of pyroptosis-related genes in the diagnosis and subclassification of sepsis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10631697/
https://www.ncbi.nlm.nih.gov/pubmed/37939116
http://dx.doi.org/10.1371/journal.pone.0293537
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