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Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma
Approximately 30% of early-stage lung adenocarcinoma patients present with disease progression after successful surgical resection. Despite efforts of mapping the genetic landscape, there has been limited success in discovering predictive biomarkers of disease outcomes. Here we performed a systemati...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10632519/ https://www.ncbi.nlm.nih.gov/pubmed/37938580 http://dx.doi.org/10.1038/s41467-023-42327-x |
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author | Dolgalev, Igor Zhou, Hua Murrell, Nina Le, Hortense Sakellaropoulos, Theodore Coudray, Nicolas Zhu, Kelsey Vasudevaraja, Varshini Yeaton, Anna Goparaju, Chandra Li, Yonghua Sulaiman, Imran Tsay, Jun-Chieh J. Meyn, Peter Mohamed, Hussein Sydney, Iris Shiomi, Tomoe Ramaswami, Sitharam Narula, Navneet Kulicke, Ruth Davis, Fred P. Stransky, Nicolas Smolen, Gromoslaw A. Cheng, Wei-Yi Cai, James Punekar, Salman Velcheti, Vamsidhar Sterman, Daniel H. Poirier, J. T. Neel, Ben Wong, Kwok-Kin Chiriboga, Luis Heguy, Adriana Papagiannakopoulos, Thales Nadorp, Bettina Snuderl, Matija Segal, Leopoldo N. Moreira, Andre L. Pass, Harvey I. Tsirigos, Aristotelis |
author_facet | Dolgalev, Igor Zhou, Hua Murrell, Nina Le, Hortense Sakellaropoulos, Theodore Coudray, Nicolas Zhu, Kelsey Vasudevaraja, Varshini Yeaton, Anna Goparaju, Chandra Li, Yonghua Sulaiman, Imran Tsay, Jun-Chieh J. Meyn, Peter Mohamed, Hussein Sydney, Iris Shiomi, Tomoe Ramaswami, Sitharam Narula, Navneet Kulicke, Ruth Davis, Fred P. Stransky, Nicolas Smolen, Gromoslaw A. Cheng, Wei-Yi Cai, James Punekar, Salman Velcheti, Vamsidhar Sterman, Daniel H. Poirier, J. T. Neel, Ben Wong, Kwok-Kin Chiriboga, Luis Heguy, Adriana Papagiannakopoulos, Thales Nadorp, Bettina Snuderl, Matija Segal, Leopoldo N. Moreira, Andre L. Pass, Harvey I. Tsirigos, Aristotelis |
author_sort | Dolgalev, Igor |
collection | PubMed |
description | Approximately 30% of early-stage lung adenocarcinoma patients present with disease progression after successful surgical resection. Despite efforts of mapping the genetic landscape, there has been limited success in discovering predictive biomarkers of disease outcomes. Here we performed a systematic multi-omic assessment of 143 tumors and matched tumor-adjacent, histologically-normal lung tissue with long-term patient follow-up. Through histologic, mutational, and transcriptomic profiling of tumor and adjacent-normal tissue, we identified an inflammatory gene signature in tumor-adjacent tissue as the strongest clinical predictor of disease progression. Single-cell transcriptomic analysis demonstrated the progression-associated inflammatory signature was expressed in both immune and non-immune cells, and cell type-specific profiling in monocytes further improved outcome predictions. Additional analyses of tumor-adjacent transcriptomic data from The Cancer Genome Atlas validated the association of the inflammatory signature with worse outcomes across cancers. Collectively, our study suggests that molecular profiling of tumor-adjacent tissue can identify patients at high risk for disease progression. |
format | Online Article Text |
id | pubmed-10632519 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-106325192023-11-10 Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma Dolgalev, Igor Zhou, Hua Murrell, Nina Le, Hortense Sakellaropoulos, Theodore Coudray, Nicolas Zhu, Kelsey Vasudevaraja, Varshini Yeaton, Anna Goparaju, Chandra Li, Yonghua Sulaiman, Imran Tsay, Jun-Chieh J. Meyn, Peter Mohamed, Hussein Sydney, Iris Shiomi, Tomoe Ramaswami, Sitharam Narula, Navneet Kulicke, Ruth Davis, Fred P. Stransky, Nicolas Smolen, Gromoslaw A. Cheng, Wei-Yi Cai, James Punekar, Salman Velcheti, Vamsidhar Sterman, Daniel H. Poirier, J. T. Neel, Ben Wong, Kwok-Kin Chiriboga, Luis Heguy, Adriana Papagiannakopoulos, Thales Nadorp, Bettina Snuderl, Matija Segal, Leopoldo N. Moreira, Andre L. Pass, Harvey I. Tsirigos, Aristotelis Nat Commun Article Approximately 30% of early-stage lung adenocarcinoma patients present with disease progression after successful surgical resection. Despite efforts of mapping the genetic landscape, there has been limited success in discovering predictive biomarkers of disease outcomes. Here we performed a systematic multi-omic assessment of 143 tumors and matched tumor-adjacent, histologically-normal lung tissue with long-term patient follow-up. Through histologic, mutational, and transcriptomic profiling of tumor and adjacent-normal tissue, we identified an inflammatory gene signature in tumor-adjacent tissue as the strongest clinical predictor of disease progression. Single-cell transcriptomic analysis demonstrated the progression-associated inflammatory signature was expressed in both immune and non-immune cells, and cell type-specific profiling in monocytes further improved outcome predictions. Additional analyses of tumor-adjacent transcriptomic data from The Cancer Genome Atlas validated the association of the inflammatory signature with worse outcomes across cancers. Collectively, our study suggests that molecular profiling of tumor-adjacent tissue can identify patients at high risk for disease progression. Nature Publishing Group UK 2023-11-08 /pmc/articles/PMC10632519/ /pubmed/37938580 http://dx.doi.org/10.1038/s41467-023-42327-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Dolgalev, Igor Zhou, Hua Murrell, Nina Le, Hortense Sakellaropoulos, Theodore Coudray, Nicolas Zhu, Kelsey Vasudevaraja, Varshini Yeaton, Anna Goparaju, Chandra Li, Yonghua Sulaiman, Imran Tsay, Jun-Chieh J. Meyn, Peter Mohamed, Hussein Sydney, Iris Shiomi, Tomoe Ramaswami, Sitharam Narula, Navneet Kulicke, Ruth Davis, Fred P. Stransky, Nicolas Smolen, Gromoslaw A. Cheng, Wei-Yi Cai, James Punekar, Salman Velcheti, Vamsidhar Sterman, Daniel H. Poirier, J. T. Neel, Ben Wong, Kwok-Kin Chiriboga, Luis Heguy, Adriana Papagiannakopoulos, Thales Nadorp, Bettina Snuderl, Matija Segal, Leopoldo N. Moreira, Andre L. Pass, Harvey I. Tsirigos, Aristotelis Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma |
title | Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma |
title_full | Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma |
title_fullStr | Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma |
title_full_unstemmed | Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma |
title_short | Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma |
title_sort | inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10632519/ https://www.ncbi.nlm.nih.gov/pubmed/37938580 http://dx.doi.org/10.1038/s41467-023-42327-x |
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