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Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma

Approximately 30% of early-stage lung adenocarcinoma patients present with disease progression after successful surgical resection. Despite efforts of mapping the genetic landscape, there has been limited success in discovering predictive biomarkers of disease outcomes. Here we performed a systemati...

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Autores principales: Dolgalev, Igor, Zhou, Hua, Murrell, Nina, Le, Hortense, Sakellaropoulos, Theodore, Coudray, Nicolas, Zhu, Kelsey, Vasudevaraja, Varshini, Yeaton, Anna, Goparaju, Chandra, Li, Yonghua, Sulaiman, Imran, Tsay, Jun-Chieh J., Meyn, Peter, Mohamed, Hussein, Sydney, Iris, Shiomi, Tomoe, Ramaswami, Sitharam, Narula, Navneet, Kulicke, Ruth, Davis, Fred P., Stransky, Nicolas, Smolen, Gromoslaw A., Cheng, Wei-Yi, Cai, James, Punekar, Salman, Velcheti, Vamsidhar, Sterman, Daniel H., Poirier, J. T., Neel, Ben, Wong, Kwok-Kin, Chiriboga, Luis, Heguy, Adriana, Papagiannakopoulos, Thales, Nadorp, Bettina, Snuderl, Matija, Segal, Leopoldo N., Moreira, Andre L., Pass, Harvey I., Tsirigos, Aristotelis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10632519/
https://www.ncbi.nlm.nih.gov/pubmed/37938580
http://dx.doi.org/10.1038/s41467-023-42327-x
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author Dolgalev, Igor
Zhou, Hua
Murrell, Nina
Le, Hortense
Sakellaropoulos, Theodore
Coudray, Nicolas
Zhu, Kelsey
Vasudevaraja, Varshini
Yeaton, Anna
Goparaju, Chandra
Li, Yonghua
Sulaiman, Imran
Tsay, Jun-Chieh J.
Meyn, Peter
Mohamed, Hussein
Sydney, Iris
Shiomi, Tomoe
Ramaswami, Sitharam
Narula, Navneet
Kulicke, Ruth
Davis, Fred P.
Stransky, Nicolas
Smolen, Gromoslaw A.
Cheng, Wei-Yi
Cai, James
Punekar, Salman
Velcheti, Vamsidhar
Sterman, Daniel H.
Poirier, J. T.
Neel, Ben
Wong, Kwok-Kin
Chiriboga, Luis
Heguy, Adriana
Papagiannakopoulos, Thales
Nadorp, Bettina
Snuderl, Matija
Segal, Leopoldo N.
Moreira, Andre L.
Pass, Harvey I.
Tsirigos, Aristotelis
author_facet Dolgalev, Igor
Zhou, Hua
Murrell, Nina
Le, Hortense
Sakellaropoulos, Theodore
Coudray, Nicolas
Zhu, Kelsey
Vasudevaraja, Varshini
Yeaton, Anna
Goparaju, Chandra
Li, Yonghua
Sulaiman, Imran
Tsay, Jun-Chieh J.
Meyn, Peter
Mohamed, Hussein
Sydney, Iris
Shiomi, Tomoe
Ramaswami, Sitharam
Narula, Navneet
Kulicke, Ruth
Davis, Fred P.
Stransky, Nicolas
Smolen, Gromoslaw A.
Cheng, Wei-Yi
Cai, James
Punekar, Salman
Velcheti, Vamsidhar
Sterman, Daniel H.
Poirier, J. T.
Neel, Ben
Wong, Kwok-Kin
Chiriboga, Luis
Heguy, Adriana
Papagiannakopoulos, Thales
Nadorp, Bettina
Snuderl, Matija
Segal, Leopoldo N.
Moreira, Andre L.
Pass, Harvey I.
Tsirigos, Aristotelis
author_sort Dolgalev, Igor
collection PubMed
description Approximately 30% of early-stage lung adenocarcinoma patients present with disease progression after successful surgical resection. Despite efforts of mapping the genetic landscape, there has been limited success in discovering predictive biomarkers of disease outcomes. Here we performed a systematic multi-omic assessment of 143 tumors and matched tumor-adjacent, histologically-normal lung tissue with long-term patient follow-up. Through histologic, mutational, and transcriptomic profiling of tumor and adjacent-normal tissue, we identified an inflammatory gene signature in tumor-adjacent tissue as the strongest clinical predictor of disease progression. Single-cell transcriptomic analysis demonstrated the progression-associated inflammatory signature was expressed in both immune and non-immune cells, and cell type-specific profiling in monocytes further improved outcome predictions. Additional analyses of tumor-adjacent transcriptomic data from The Cancer Genome Atlas validated the association of the inflammatory signature with worse outcomes across cancers. Collectively, our study suggests that molecular profiling of tumor-adjacent tissue can identify patients at high risk for disease progression.
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spelling pubmed-106325192023-11-10 Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma Dolgalev, Igor Zhou, Hua Murrell, Nina Le, Hortense Sakellaropoulos, Theodore Coudray, Nicolas Zhu, Kelsey Vasudevaraja, Varshini Yeaton, Anna Goparaju, Chandra Li, Yonghua Sulaiman, Imran Tsay, Jun-Chieh J. Meyn, Peter Mohamed, Hussein Sydney, Iris Shiomi, Tomoe Ramaswami, Sitharam Narula, Navneet Kulicke, Ruth Davis, Fred P. Stransky, Nicolas Smolen, Gromoslaw A. Cheng, Wei-Yi Cai, James Punekar, Salman Velcheti, Vamsidhar Sterman, Daniel H. Poirier, J. T. Neel, Ben Wong, Kwok-Kin Chiriboga, Luis Heguy, Adriana Papagiannakopoulos, Thales Nadorp, Bettina Snuderl, Matija Segal, Leopoldo N. Moreira, Andre L. Pass, Harvey I. Tsirigos, Aristotelis Nat Commun Article Approximately 30% of early-stage lung adenocarcinoma patients present with disease progression after successful surgical resection. Despite efforts of mapping the genetic landscape, there has been limited success in discovering predictive biomarkers of disease outcomes. Here we performed a systematic multi-omic assessment of 143 tumors and matched tumor-adjacent, histologically-normal lung tissue with long-term patient follow-up. Through histologic, mutational, and transcriptomic profiling of tumor and adjacent-normal tissue, we identified an inflammatory gene signature in tumor-adjacent tissue as the strongest clinical predictor of disease progression. Single-cell transcriptomic analysis demonstrated the progression-associated inflammatory signature was expressed in both immune and non-immune cells, and cell type-specific profiling in monocytes further improved outcome predictions. Additional analyses of tumor-adjacent transcriptomic data from The Cancer Genome Atlas validated the association of the inflammatory signature with worse outcomes across cancers. Collectively, our study suggests that molecular profiling of tumor-adjacent tissue can identify patients at high risk for disease progression. Nature Publishing Group UK 2023-11-08 /pmc/articles/PMC10632519/ /pubmed/37938580 http://dx.doi.org/10.1038/s41467-023-42327-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Dolgalev, Igor
Zhou, Hua
Murrell, Nina
Le, Hortense
Sakellaropoulos, Theodore
Coudray, Nicolas
Zhu, Kelsey
Vasudevaraja, Varshini
Yeaton, Anna
Goparaju, Chandra
Li, Yonghua
Sulaiman, Imran
Tsay, Jun-Chieh J.
Meyn, Peter
Mohamed, Hussein
Sydney, Iris
Shiomi, Tomoe
Ramaswami, Sitharam
Narula, Navneet
Kulicke, Ruth
Davis, Fred P.
Stransky, Nicolas
Smolen, Gromoslaw A.
Cheng, Wei-Yi
Cai, James
Punekar, Salman
Velcheti, Vamsidhar
Sterman, Daniel H.
Poirier, J. T.
Neel, Ben
Wong, Kwok-Kin
Chiriboga, Luis
Heguy, Adriana
Papagiannakopoulos, Thales
Nadorp, Bettina
Snuderl, Matija
Segal, Leopoldo N.
Moreira, Andre L.
Pass, Harvey I.
Tsirigos, Aristotelis
Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma
title Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma
title_full Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma
title_fullStr Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma
title_full_unstemmed Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma
title_short Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma
title_sort inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10632519/
https://www.ncbi.nlm.nih.gov/pubmed/37938580
http://dx.doi.org/10.1038/s41467-023-42327-x
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