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Identification of hybrids between the Japanese giant salamander (Andrias japonicus) and Chinese giant salamander (Andrias cf. davidianus) using deep learning and smartphone images

Human‐mediated hybridization between native and non‐native species is causing biodiversity loss worldwide. Hybridization has contributed to the extinction of many species through direct and indirect processes such as loss of reproductive opportunity and genetic introgression. Therefore, it is essent...

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Autores principales: Takaya, Kosuke, Taguchi, Yuki, Ise, Takeshi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10632944/
https://www.ncbi.nlm.nih.gov/pubmed/37953985
http://dx.doi.org/10.1002/ece3.10698
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author Takaya, Kosuke
Taguchi, Yuki
Ise, Takeshi
author_facet Takaya, Kosuke
Taguchi, Yuki
Ise, Takeshi
author_sort Takaya, Kosuke
collection PubMed
description Human‐mediated hybridization between native and non‐native species is causing biodiversity loss worldwide. Hybridization has contributed to the extinction of many species through direct and indirect processes such as loss of reproductive opportunity and genetic introgression. Therefore, it is essential to manage hybrids to conserve biodiversity. However, specialized knowledge is required to identify the target species based on visual characteristics when two species have similar features. Although image recognition technology can be a powerful tool for identifying hybrids, studies have yet to utilize deep learning approaches. Hence, this study aimed to identify hybrids between the native Japanese giant salamander (Andrias japonicus) and the non‐native Chinese giant salamander (Andrias cf. davidianus) using EfficientNetV2 and smartphone images. We used smartphone images of 11 individuals of native A. japonicus (five training and six test images) and 20 individuals of hybrids between A. japonicus and A. cf. davidianus (five training and 15 test images). In our experimental environment, an AI model constructed with EfficientNetV2 exhibited 100% accuracy in identifying hybrids. In addition, gradient‐weighted class activation mapping revealed that the AI model was able to classify A. japonicus and hybrids between A. japonicus and A. cf. davidianus on the basis of the dorsal head spot patterning. Our approach thus enables the identification of hybrids against A. japonicus, which was previously considered difficult by non‐experts. Furthermore, since this study achieved reliable identification using smartphone images, it is expected to be applied to a wide range of citizen science projects.
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spelling pubmed-106329442023-11-10 Identification of hybrids between the Japanese giant salamander (Andrias japonicus) and Chinese giant salamander (Andrias cf. davidianus) using deep learning and smartphone images Takaya, Kosuke Taguchi, Yuki Ise, Takeshi Ecol Evol Research Articles Human‐mediated hybridization between native and non‐native species is causing biodiversity loss worldwide. Hybridization has contributed to the extinction of many species through direct and indirect processes such as loss of reproductive opportunity and genetic introgression. Therefore, it is essential to manage hybrids to conserve biodiversity. However, specialized knowledge is required to identify the target species based on visual characteristics when two species have similar features. Although image recognition technology can be a powerful tool for identifying hybrids, studies have yet to utilize deep learning approaches. Hence, this study aimed to identify hybrids between the native Japanese giant salamander (Andrias japonicus) and the non‐native Chinese giant salamander (Andrias cf. davidianus) using EfficientNetV2 and smartphone images. We used smartphone images of 11 individuals of native A. japonicus (five training and six test images) and 20 individuals of hybrids between A. japonicus and A. cf. davidianus (five training and 15 test images). In our experimental environment, an AI model constructed with EfficientNetV2 exhibited 100% accuracy in identifying hybrids. In addition, gradient‐weighted class activation mapping revealed that the AI model was able to classify A. japonicus and hybrids between A. japonicus and A. cf. davidianus on the basis of the dorsal head spot patterning. Our approach thus enables the identification of hybrids against A. japonicus, which was previously considered difficult by non‐experts. Furthermore, since this study achieved reliable identification using smartphone images, it is expected to be applied to a wide range of citizen science projects. John Wiley and Sons Inc. 2023-11-09 /pmc/articles/PMC10632944/ /pubmed/37953985 http://dx.doi.org/10.1002/ece3.10698 Text en © 2023 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Takaya, Kosuke
Taguchi, Yuki
Ise, Takeshi
Identification of hybrids between the Japanese giant salamander (Andrias japonicus) and Chinese giant salamander (Andrias cf. davidianus) using deep learning and smartphone images
title Identification of hybrids between the Japanese giant salamander (Andrias japonicus) and Chinese giant salamander (Andrias cf. davidianus) using deep learning and smartphone images
title_full Identification of hybrids between the Japanese giant salamander (Andrias japonicus) and Chinese giant salamander (Andrias cf. davidianus) using deep learning and smartphone images
title_fullStr Identification of hybrids between the Japanese giant salamander (Andrias japonicus) and Chinese giant salamander (Andrias cf. davidianus) using deep learning and smartphone images
title_full_unstemmed Identification of hybrids between the Japanese giant salamander (Andrias japonicus) and Chinese giant salamander (Andrias cf. davidianus) using deep learning and smartphone images
title_short Identification of hybrids between the Japanese giant salamander (Andrias japonicus) and Chinese giant salamander (Andrias cf. davidianus) using deep learning and smartphone images
title_sort identification of hybrids between the japanese giant salamander (andrias japonicus) and chinese giant salamander (andrias cf. davidianus) using deep learning and smartphone images
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10632944/
https://www.ncbi.nlm.nih.gov/pubmed/37953985
http://dx.doi.org/10.1002/ece3.10698
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