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Establishing reliable DNA barcoding primers for jumping plant lice (Psylloidea, Hemiptera)

OBJECTIVES: DNA Barcoding has proven to be a reliable method for rapid insect identification. The success of this method is based on the amplification of a specific region, the ‘Folmer’ barcode region at the 5´ start of the cytochrome c oxidase 1 gene (cox1), with universal primers. Previous studies...

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Autores principales: Bastin, Saskia, Percy, Diana M., Siverio, Felipe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10634070/
https://www.ncbi.nlm.nih.gov/pubmed/37941051
http://dx.doi.org/10.1186/s13104-023-06585-8
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author Bastin, Saskia
Percy, Diana M.
Siverio, Felipe
author_facet Bastin, Saskia
Percy, Diana M.
Siverio, Felipe
author_sort Bastin, Saskia
collection PubMed
description OBJECTIVES: DNA Barcoding has proven to be a reliable method for rapid insect identification. The success of this method is based on the amplification of a specific region, the ‘Folmer’ barcode region at the 5´ start of the cytochrome c oxidase 1 gene (cox1), with universal primers. Previous studies showed failures of standard “universal” primers to amplify this region in psyllids. The aim of the study was the design of a new alternative more reliable primer combination for taxa of the superfamily Psylloidea and its comparison with the performance of the standard “universal” Folmer-primers. RESULTS: A newly designed degenerate forward primer LCOP-F was developed following comparison of the sequence alignment of the priming site of “universal” primer LCO1490 and the standard insect forward primer LepF1. When combined with the “universal” reverse primer, HCO2198, this new primer pairing was able to generate barcode sequence for all 36 species in 20 genera across the five families of psyllids tested in this study, and these primers were found to be more universally reliable across psyllid taxa than other primer pairs tested. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-023-06585-8.
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spelling pubmed-106340702023-11-10 Establishing reliable DNA barcoding primers for jumping plant lice (Psylloidea, Hemiptera) Bastin, Saskia Percy, Diana M. Siverio, Felipe BMC Res Notes Research Note OBJECTIVES: DNA Barcoding has proven to be a reliable method for rapid insect identification. The success of this method is based on the amplification of a specific region, the ‘Folmer’ barcode region at the 5´ start of the cytochrome c oxidase 1 gene (cox1), with universal primers. Previous studies showed failures of standard “universal” primers to amplify this region in psyllids. The aim of the study was the design of a new alternative more reliable primer combination for taxa of the superfamily Psylloidea and its comparison with the performance of the standard “universal” Folmer-primers. RESULTS: A newly designed degenerate forward primer LCOP-F was developed following comparison of the sequence alignment of the priming site of “universal” primer LCO1490 and the standard insect forward primer LepF1. When combined with the “universal” reverse primer, HCO2198, this new primer pairing was able to generate barcode sequence for all 36 species in 20 genera across the five families of psyllids tested in this study, and these primers were found to be more universally reliable across psyllid taxa than other primer pairs tested. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-023-06585-8. BioMed Central 2023-11-08 /pmc/articles/PMC10634070/ /pubmed/37941051 http://dx.doi.org/10.1186/s13104-023-06585-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Note
Bastin, Saskia
Percy, Diana M.
Siverio, Felipe
Establishing reliable DNA barcoding primers for jumping plant lice (Psylloidea, Hemiptera)
title Establishing reliable DNA barcoding primers for jumping plant lice (Psylloidea, Hemiptera)
title_full Establishing reliable DNA barcoding primers for jumping plant lice (Psylloidea, Hemiptera)
title_fullStr Establishing reliable DNA barcoding primers for jumping plant lice (Psylloidea, Hemiptera)
title_full_unstemmed Establishing reliable DNA barcoding primers for jumping plant lice (Psylloidea, Hemiptera)
title_short Establishing reliable DNA barcoding primers for jumping plant lice (Psylloidea, Hemiptera)
title_sort establishing reliable dna barcoding primers for jumping plant lice (psylloidea, hemiptera)
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10634070/
https://www.ncbi.nlm.nih.gov/pubmed/37941051
http://dx.doi.org/10.1186/s13104-023-06585-8
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