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An online soft sensor method for biochemical reaction process based on JS-ISSA-XGBoost

BACKGROUND: A method combining offline techniques and the just-in-time learning strategy (JITL) is proposed, because the biochemical reaction process often encounters changing features and parameters over time. METHODS: Firstly, multiple sub-databases in the fermentation process are constructed offl...

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Detalles Bibliográficos
Autores principales: Zhang, Ligang, Wang, Bo, Shen, Yao, Nie, Yongxin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10634092/
https://www.ncbi.nlm.nih.gov/pubmed/37940925
http://dx.doi.org/10.1186/s12896-023-00816-3
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author Zhang, Ligang
Wang, Bo
Shen, Yao
Nie, Yongxin
author_facet Zhang, Ligang
Wang, Bo
Shen, Yao
Nie, Yongxin
author_sort Zhang, Ligang
collection PubMed
description BACKGROUND: A method combining offline techniques and the just-in-time learning strategy (JITL) is proposed, because the biochemical reaction process often encounters changing features and parameters over time. METHODS: Firstly, multiple sub-databases in the fermentation process are constructed offline by an improved fuzzy C-means algorithm and the sample data are adaptively pruned by a similarity query threshold. Secondly, an improved eXtreme Gradient Boosting (XGBoost) method is used on the online modeling stage to build soft sensor models, and the multi-similarity-driven just-in-time learning strategy is used to increase the diversity of the model. Finally, to improve the generalization of the whole algorithm, the output of the base learner is fused by an improved Stacking integration model and then the predictive output is performed. RESULTS: Applying the constructed soft sensor model to the problem of predicting cell concentration and product concentration in Pichia pastoris fermentation process. The experimental results show that the root mean square error of the cell concentration is 0.0260, the coefficient of determination is 0.9945, the root mean square error of the product concentration is 2.6688, and the coefficient of determination is 0.9970. It shows that the proposed method has the advantages of timely prediction and high prediction accuracy, which validates the effectiveness and practicality of the method. CONCLUSION: The JS-ISSA-XGBoost is an extensive and excellent soft measurement model that meets the practical needs for real-time monitoring of parameters and prediction of control in biochemical reactions.
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spelling pubmed-106340922023-11-10 An online soft sensor method for biochemical reaction process based on JS-ISSA-XGBoost Zhang, Ligang Wang, Bo Shen, Yao Nie, Yongxin BMC Biotechnol Research BACKGROUND: A method combining offline techniques and the just-in-time learning strategy (JITL) is proposed, because the biochemical reaction process often encounters changing features and parameters over time. METHODS: Firstly, multiple sub-databases in the fermentation process are constructed offline by an improved fuzzy C-means algorithm and the sample data are adaptively pruned by a similarity query threshold. Secondly, an improved eXtreme Gradient Boosting (XGBoost) method is used on the online modeling stage to build soft sensor models, and the multi-similarity-driven just-in-time learning strategy is used to increase the diversity of the model. Finally, to improve the generalization of the whole algorithm, the output of the base learner is fused by an improved Stacking integration model and then the predictive output is performed. RESULTS: Applying the constructed soft sensor model to the problem of predicting cell concentration and product concentration in Pichia pastoris fermentation process. The experimental results show that the root mean square error of the cell concentration is 0.0260, the coefficient of determination is 0.9945, the root mean square error of the product concentration is 2.6688, and the coefficient of determination is 0.9970. It shows that the proposed method has the advantages of timely prediction and high prediction accuracy, which validates the effectiveness and practicality of the method. CONCLUSION: The JS-ISSA-XGBoost is an extensive and excellent soft measurement model that meets the practical needs for real-time monitoring of parameters and prediction of control in biochemical reactions. BioMed Central 2023-11-08 /pmc/articles/PMC10634092/ /pubmed/37940925 http://dx.doi.org/10.1186/s12896-023-00816-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Zhang, Ligang
Wang, Bo
Shen, Yao
Nie, Yongxin
An online soft sensor method for biochemical reaction process based on JS-ISSA-XGBoost
title An online soft sensor method for biochemical reaction process based on JS-ISSA-XGBoost
title_full An online soft sensor method for biochemical reaction process based on JS-ISSA-XGBoost
title_fullStr An online soft sensor method for biochemical reaction process based on JS-ISSA-XGBoost
title_full_unstemmed An online soft sensor method for biochemical reaction process based on JS-ISSA-XGBoost
title_short An online soft sensor method for biochemical reaction process based on JS-ISSA-XGBoost
title_sort online soft sensor method for biochemical reaction process based on js-issa-xgboost
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10634092/
https://www.ncbi.nlm.nih.gov/pubmed/37940925
http://dx.doi.org/10.1186/s12896-023-00816-3
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