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Leveraging a disulfidptosis/ferroptosis-based signature to predict the prognosis of lung adenocarcinoma
BACKGROUND: Disulfidptosis and Ferroptosis are two novel forms of cell death. Although their mechanisms differ, research has shown that there is a relationship between the two. Investigating the connection between these two forms of cell death can further deepen our understanding of the development...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10634118/ https://www.ncbi.nlm.nih.gov/pubmed/37946181 http://dx.doi.org/10.1186/s12935-023-03125-z |
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author | Ma, Xiaoqing Deng, Zilin Li, Zhen Ma, Ting Li, Guiqing Zhang, Cuijia Zhang, Wentao Chang, Jin |
author_facet | Ma, Xiaoqing Deng, Zilin Li, Zhen Ma, Ting Li, Guiqing Zhang, Cuijia Zhang, Wentao Chang, Jin |
author_sort | Ma, Xiaoqing |
collection | PubMed |
description | BACKGROUND: Disulfidptosis and Ferroptosis are two novel forms of cell death. Although their mechanisms differ, research has shown that there is a relationship between the two. Investigating the connection between these two forms of cell death can further deepen our understanding of the development and progression of cancer, and provide better prediction models for accurate prognosis. METHODS: In this study, RNA sequencing (RNA-seq) data, clinical data, single nucleotide polymorphism (SNP) data, and single-cell sequencing data were obtained from public databases. We used weighted gene co-expression network analysis (WGCNA) and unsupervised clustering to identify new Disulfidptosis/Ferroptosis-Related Genes (DFRG), and constructed a LASSO COX prognosis model that was externally validated. To further explore this novel signature, pathway and function analysis was performed, and differences in gene mutation frequency between high- and low-risk groups were studied. Importantly, we also conducted research on immune checkpoint, immune cell infiltration levels and immune resistance indicators, in addition to analyzing real clinical immunotherapy data. RESULTS: We have identified four optimal disulfidptosis/ferroptosis-related genes (ODFRGs) that are differentially expressed and associated with the prognosis of Lung Adenocarcinoma (LUAD). These genes include GMPR, MCFD2, MRPL13, and SALL2. Based on these ODFRGs, we constructed a robust prognostic model in this study, and the high-risk group showed significantly lower overall survival (OS) compared to the low-risk group. Furthermore, this model can also predict the immunotherapy outcomes of LUAD patients to some extent. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12935-023-03125-z. |
format | Online Article Text |
id | pubmed-10634118 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-106341182023-11-10 Leveraging a disulfidptosis/ferroptosis-based signature to predict the prognosis of lung adenocarcinoma Ma, Xiaoqing Deng, Zilin Li, Zhen Ma, Ting Li, Guiqing Zhang, Cuijia Zhang, Wentao Chang, Jin Cancer Cell Int Research BACKGROUND: Disulfidptosis and Ferroptosis are two novel forms of cell death. Although their mechanisms differ, research has shown that there is a relationship between the two. Investigating the connection between these two forms of cell death can further deepen our understanding of the development and progression of cancer, and provide better prediction models for accurate prognosis. METHODS: In this study, RNA sequencing (RNA-seq) data, clinical data, single nucleotide polymorphism (SNP) data, and single-cell sequencing data were obtained from public databases. We used weighted gene co-expression network analysis (WGCNA) and unsupervised clustering to identify new Disulfidptosis/Ferroptosis-Related Genes (DFRG), and constructed a LASSO COX prognosis model that was externally validated. To further explore this novel signature, pathway and function analysis was performed, and differences in gene mutation frequency between high- and low-risk groups were studied. Importantly, we also conducted research on immune checkpoint, immune cell infiltration levels and immune resistance indicators, in addition to analyzing real clinical immunotherapy data. RESULTS: We have identified four optimal disulfidptosis/ferroptosis-related genes (ODFRGs) that are differentially expressed and associated with the prognosis of Lung Adenocarcinoma (LUAD). These genes include GMPR, MCFD2, MRPL13, and SALL2. Based on these ODFRGs, we constructed a robust prognostic model in this study, and the high-risk group showed significantly lower overall survival (OS) compared to the low-risk group. Furthermore, this model can also predict the immunotherapy outcomes of LUAD patients to some extent. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12935-023-03125-z. BioMed Central 2023-11-09 /pmc/articles/PMC10634118/ /pubmed/37946181 http://dx.doi.org/10.1186/s12935-023-03125-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Ma, Xiaoqing Deng, Zilin Li, Zhen Ma, Ting Li, Guiqing Zhang, Cuijia Zhang, Wentao Chang, Jin Leveraging a disulfidptosis/ferroptosis-based signature to predict the prognosis of lung adenocarcinoma |
title | Leveraging a disulfidptosis/ferroptosis-based signature to predict the prognosis of lung adenocarcinoma |
title_full | Leveraging a disulfidptosis/ferroptosis-based signature to predict the prognosis of lung adenocarcinoma |
title_fullStr | Leveraging a disulfidptosis/ferroptosis-based signature to predict the prognosis of lung adenocarcinoma |
title_full_unstemmed | Leveraging a disulfidptosis/ferroptosis-based signature to predict the prognosis of lung adenocarcinoma |
title_short | Leveraging a disulfidptosis/ferroptosis-based signature to predict the prognosis of lung adenocarcinoma |
title_sort | leveraging a disulfidptosis/ferroptosis-based signature to predict the prognosis of lung adenocarcinoma |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10634118/ https://www.ncbi.nlm.nih.gov/pubmed/37946181 http://dx.doi.org/10.1186/s12935-023-03125-z |
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