Cyclone: open-source package for simulation and analysis of finite dynamical systems

MOTIVATION: While there are software packages that analyze Boolean, ternary, or other multi-state models, none compute the complete state space of function-based models over any finite set. Results: We propose Cyclone, a simple light-weight software package which simulates the complete state space f...

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Detalles Bibliográficos
Autores principales: Dimitrova, Elena S, Knapp, Adam C, Stigler, Brandilyn, Stillman, Michael E
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10634519/
https://www.ncbi.nlm.nih.gov/pubmed/37856334
http://dx.doi.org/10.1093/bioinformatics/btad634
Descripción
Sumario:MOTIVATION: While there are software packages that analyze Boolean, ternary, or other multi-state models, none compute the complete state space of function-based models over any finite set. Results: We propose Cyclone, a simple light-weight software package which simulates the complete state space for a finite dynamical system over any finite set. AVAILABILITY AND IMPLEMENTATION: Source code is freely available at https://github.com/discretedynamics/cyclone under the Apache-2.0 license.

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