Cyclone: open-source package for simulation and analysis of finite dynamical systems

MOTIVATION: While there are software packages that analyze Boolean, ternary, or other multi-state models, none compute the complete state space of function-based models over any finite set. Results: We propose Cyclone, a simple light-weight software package which simulates the complete state space f...

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Detalles Bibliográficos
Autores principales: Dimitrova, Elena S, Knapp, Adam C, Stigler, Brandilyn, Stillman, Michael E
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10634519/
https://www.ncbi.nlm.nih.gov/pubmed/37856334
http://dx.doi.org/10.1093/bioinformatics/btad634
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author Dimitrova, Elena S
Knapp, Adam C
Stigler, Brandilyn
Stillman, Michael E
author_facet Dimitrova, Elena S
Knapp, Adam C
Stigler, Brandilyn
Stillman, Michael E
author_sort Dimitrova, Elena S
collection PubMed
description MOTIVATION: While there are software packages that analyze Boolean, ternary, or other multi-state models, none compute the complete state space of function-based models over any finite set. Results: We propose Cyclone, a simple light-weight software package which simulates the complete state space for a finite dynamical system over any finite set. AVAILABILITY AND IMPLEMENTATION: Source code is freely available at https://github.com/discretedynamics/cyclone under the Apache-2.0 license.
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spelling pubmed-106345192023-11-10 Cyclone: open-source package for simulation and analysis of finite dynamical systems Dimitrova, Elena S Knapp, Adam C Stigler, Brandilyn Stillman, Michael E Bioinformatics Applications Note MOTIVATION: While there are software packages that analyze Boolean, ternary, or other multi-state models, none compute the complete state space of function-based models over any finite set. Results: We propose Cyclone, a simple light-weight software package which simulates the complete state space for a finite dynamical system over any finite set. AVAILABILITY AND IMPLEMENTATION: Source code is freely available at https://github.com/discretedynamics/cyclone under the Apache-2.0 license. Oxford University Press 2023-10-19 /pmc/articles/PMC10634519/ /pubmed/37856334 http://dx.doi.org/10.1093/bioinformatics/btad634 Text en © The Author(s) 2023. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Dimitrova, Elena S
Knapp, Adam C
Stigler, Brandilyn
Stillman, Michael E
Cyclone: open-source package for simulation and analysis of finite dynamical systems
title Cyclone: open-source package for simulation and analysis of finite dynamical systems
title_full Cyclone: open-source package for simulation and analysis of finite dynamical systems
title_fullStr Cyclone: open-source package for simulation and analysis of finite dynamical systems
title_full_unstemmed Cyclone: open-source package for simulation and analysis of finite dynamical systems
title_short Cyclone: open-source package for simulation and analysis of finite dynamical systems
title_sort cyclone: open-source package for simulation and analysis of finite dynamical systems
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10634519/
https://www.ncbi.nlm.nih.gov/pubmed/37856334
http://dx.doi.org/10.1093/bioinformatics/btad634
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AT stiglerbrandilyn cycloneopensourcepackageforsimulationandanalysisoffinitedynamicalsystems
AT stillmanmichaele cycloneopensourcepackageforsimulationandanalysisoffinitedynamicalsystems

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