Draft Genome Sequence of Alternaria alternata JS-1623, a Fungal Endophyte of Abies koreana

Alternaria alternata JS-1623 is an endophytic fungus isolated from a stem tissue of Korean fir, Abies koreana. Ethyl acetate extracts of culture filtrates exhibited anti-inflammatory activity in LPS induced microglia BV-2 cell without cytotoxicity. Here we report a 33.67 Mb sized genome assembly of...

Descripción completa

Detalles Bibliográficos
Autores principales: Park, Sook-Young, Jeon, Jongbum, Kim, Jung A., Jeon, Mi Jin, Jeong, Min-Hye, Kim, Youngmin, Lee, Yerim, Chung, Hyunjung, Lee, Yong-Hwan, Kim, Soonok
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Research Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10635108/
https://www.ncbi.nlm.nih.gov/pubmed/37970559
http://dx.doi.org/10.1080/12298093.2020.1756134
_version_ 1785146288613883904
author Park, Sook-Young
Jeon, Jongbum
Kim, Jung A.
Jeon, Mi Jin
Jeong, Min-Hye
Kim, Youngmin
Lee, Yerim
Chung, Hyunjung
Lee, Yong-Hwan
Kim, Soonok
author_facet Park, Sook-Young
Jeon, Jongbum
Kim, Jung A.
Jeon, Mi Jin
Jeong, Min-Hye
Kim, Youngmin
Lee, Yerim
Chung, Hyunjung
Lee, Yong-Hwan
Kim, Soonok
author_sort Park, Sook-Young
collection PubMed
description Alternaria alternata JS-1623 is an endophytic fungus isolated from a stem tissue of Korean fir, Abies koreana. Ethyl acetate extracts of culture filtrates exhibited anti-inflammatory activity in LPS induced microglia BV-2 cell without cytotoxicity. Here we report a 33.67 Mb sized genome assembly of JS-1623 comprised of 13 scaffolds with N50 of 4.96 Mb, and 92.41% of BUSCO completeness. GC contents were 50.97%. Of the 11,197 genes annotated, gene families related to the biosynthesis of secondary metabolites or transcription factors were identified.
format Online
Article
Text
id pubmed-10635108
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-106351082023-11-15 Draft Genome Sequence of Alternaria alternata JS-1623, a Fungal Endophyte of Abies koreana Park, Sook-Young Jeon, Jongbum Kim, Jung A. Jeon, Mi Jin Jeong, Min-Hye Kim, Youngmin Lee, Yerim Chung, Hyunjung Lee, Yong-Hwan Kim, Soonok Mycobiology Research Note Alternaria alternata JS-1623 is an endophytic fungus isolated from a stem tissue of Korean fir, Abies koreana. Ethyl acetate extracts of culture filtrates exhibited anti-inflammatory activity in LPS induced microglia BV-2 cell without cytotoxicity. Here we report a 33.67 Mb sized genome assembly of JS-1623 comprised of 13 scaffolds with N50 of 4.96 Mb, and 92.41% of BUSCO completeness. GC contents were 50.97%. Of the 11,197 genes annotated, gene families related to the biosynthesis of secondary metabolites or transcription factors were identified. Taylor & Francis 2020-05-07 /pmc/articles/PMC10635108/ /pubmed/37970559 http://dx.doi.org/10.1080/12298093.2020.1756134 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group on behalf of the Korean Society of Mycology. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Note
Park, Sook-Young
Jeon, Jongbum
Kim, Jung A.
Jeon, Mi Jin
Jeong, Min-Hye
Kim, Youngmin
Lee, Yerim
Chung, Hyunjung
Lee, Yong-Hwan
Kim, Soonok
Draft Genome Sequence of Alternaria alternata JS-1623, a Fungal Endophyte of Abies koreana
title Draft Genome Sequence of Alternaria alternata JS-1623, a Fungal Endophyte of Abies koreana
title_full Draft Genome Sequence of Alternaria alternata JS-1623, a Fungal Endophyte of Abies koreana
title_fullStr Draft Genome Sequence of Alternaria alternata JS-1623, a Fungal Endophyte of Abies koreana
title_full_unstemmed Draft Genome Sequence of Alternaria alternata JS-1623, a Fungal Endophyte of Abies koreana
title_short Draft Genome Sequence of Alternaria alternata JS-1623, a Fungal Endophyte of Abies koreana
title_sort draft genome sequence of alternaria alternata js-1623, a fungal endophyte of abies koreana
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10635108/
https://www.ncbi.nlm.nih.gov/pubmed/37970559
http://dx.doi.org/10.1080/12298093.2020.1756134
work_keys_str_mv AT parksookyoung draftgenomesequenceofalternariaalternatajs1623afungalendophyteofabieskoreana
AT jeonjongbum draftgenomesequenceofalternariaalternatajs1623afungalendophyteofabieskoreana
AT kimjunga draftgenomesequenceofalternariaalternatajs1623afungalendophyteofabieskoreana
AT jeonmijin draftgenomesequenceofalternariaalternatajs1623afungalendophyteofabieskoreana
AT jeongminhye draftgenomesequenceofalternariaalternatajs1623afungalendophyteofabieskoreana
AT kimyoungmin draftgenomesequenceofalternariaalternatajs1623afungalendophyteofabieskoreana
AT leeyerim draftgenomesequenceofalternariaalternatajs1623afungalendophyteofabieskoreana
AT chunghyunjung draftgenomesequenceofalternariaalternatajs1623afungalendophyteofabieskoreana
AT leeyonghwan draftgenomesequenceofalternariaalternatajs1623afungalendophyteofabieskoreana
AT kimsoonok draftgenomesequenceofalternariaalternatajs1623afungalendophyteofabieskoreana

Ejemplares similares