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Topological inference on brain networks across subtypes of post-stroke aphasia
Persistent homology (PH) characterizes the shape of brain networks through the persistence features. Group comparison of persistence features from brain networks can be challenging as they are inherently heterogeneous. A recent scale-space representation of persistence diagram (PD) through heat diff...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cornell University
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10635302/ https://www.ncbi.nlm.nih.gov/pubmed/37961747 |
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author | Wang, Yuan Yin, Jian Desai, Rutvik H. |
author_facet | Wang, Yuan Yin, Jian Desai, Rutvik H. |
author_sort | Wang, Yuan |
collection | PubMed |
description | Persistent homology (PH) characterizes the shape of brain networks through the persistence features. Group comparison of persistence features from brain networks can be challenging as they are inherently heterogeneous. A recent scale-space representation of persistence diagram (PD) through heat diffusion reparameterizes using the finite number of Fourier coefficients with respect to the Laplace-Beltrami (LB) eigenfunction expansion of the domain, which provides a powerful vectorized algebraic representation for group comparisons of PDs. In this study, we advance a transposition-based permutation test for comparing multiple groups of PDs through the heat-diffusion estimates of the PDs. We evaluate the empirical performance of the spectral transposition test in capturing within- and between-group similarity and dissimilarity with respect to statistical variation of topological noise and hole location. We also illustrate how the method extends naturally into a clustering scheme by subtyping individuals with post-stroke aphasia through the PDs of their resting-state functional brain networks. |
format | Online Article Text |
id | pubmed-10635302 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cornell University |
record_format | MEDLINE/PubMed |
spelling | pubmed-106353022023-11-13 Topological inference on brain networks across subtypes of post-stroke aphasia Wang, Yuan Yin, Jian Desai, Rutvik H. ArXiv Article Persistent homology (PH) characterizes the shape of brain networks through the persistence features. Group comparison of persistence features from brain networks can be challenging as they are inherently heterogeneous. A recent scale-space representation of persistence diagram (PD) through heat diffusion reparameterizes using the finite number of Fourier coefficients with respect to the Laplace-Beltrami (LB) eigenfunction expansion of the domain, which provides a powerful vectorized algebraic representation for group comparisons of PDs. In this study, we advance a transposition-based permutation test for comparing multiple groups of PDs through the heat-diffusion estimates of the PDs. We evaluate the empirical performance of the spectral transposition test in capturing within- and between-group similarity and dissimilarity with respect to statistical variation of topological noise and hole location. We also illustrate how the method extends naturally into a clustering scheme by subtyping individuals with post-stroke aphasia through the PDs of their resting-state functional brain networks. Cornell University 2023-11-02 /pmc/articles/PMC10635302/ /pubmed/37961747 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use. |
spellingShingle | Article Wang, Yuan Yin, Jian Desai, Rutvik H. Topological inference on brain networks across subtypes of post-stroke aphasia |
title | Topological inference on brain networks across subtypes of post-stroke aphasia |
title_full | Topological inference on brain networks across subtypes of post-stroke aphasia |
title_fullStr | Topological inference on brain networks across subtypes of post-stroke aphasia |
title_full_unstemmed | Topological inference on brain networks across subtypes of post-stroke aphasia |
title_short | Topological inference on brain networks across subtypes of post-stroke aphasia |
title_sort | topological inference on brain networks across subtypes of post-stroke aphasia |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10635302/ https://www.ncbi.nlm.nih.gov/pubmed/37961747 |
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