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Birds of a feather flock together: a dataset for Clock and Adcyap1 genes from migration genetics studies
Birds in seasonal habitats rely on intricate strategies for optimal timing of migrations. This is governed by environmental cues, including photoperiod. Genetic factors affecting intrinsic timekeeping mechanisms, such as circadian clock genes, have been explored, yielding inconsistent findings with...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10636037/ https://www.ncbi.nlm.nih.gov/pubmed/37945571 http://dx.doi.org/10.1038/s41597-023-02717-8 |
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author | Le Clercq, Louis-Stéphane Bazzi, Gaia Ferrer Obiol, Joan Cecere, Jacopo G. Gianfranceschi, Luca Grobler, J. Paul Kotzé, Antoinette Riutort León, Marta González-Solís, Jacob Rubolini, Diego Liedvogel, Miriam Dalton, Desiré Lee |
author_facet | Le Clercq, Louis-Stéphane Bazzi, Gaia Ferrer Obiol, Joan Cecere, Jacopo G. Gianfranceschi, Luca Grobler, J. Paul Kotzé, Antoinette Riutort León, Marta González-Solís, Jacob Rubolini, Diego Liedvogel, Miriam Dalton, Desiré Lee |
author_sort | Le Clercq, Louis-Stéphane |
collection | PubMed |
description | Birds in seasonal habitats rely on intricate strategies for optimal timing of migrations. This is governed by environmental cues, including photoperiod. Genetic factors affecting intrinsic timekeeping mechanisms, such as circadian clock genes, have been explored, yielding inconsistent findings with potential lineage-dependency. To clarify this evidence, a systematic review and phylogenetic reanalysis was done. This descriptor outlines the methodology for sourcing, screening, and processing relevant literature and data. PRISMA guidelines were followed, ultimately including 66 studies, with 34 focusing on candidate genes at the genotype-phenotype interface. Studies were clustered using bibliographic coupling and citation network analysis, alongside scientometric analyses by publication year and location. Data was retrieved for allele data from databases, article supplements, and direct author communications. The dataset, version 1.0.2, encompasses data from 52 species, with 46 species for the Clock gene and 43 for the Adcyap1 gene. This dataset, featuring data from over 8000 birds, constitutes the most extensive cross-species collection for these candidate genes, used in studies investigating gene polymorphisms and seasonal bird migration. |
format | Online Article Text |
id | pubmed-10636037 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-106360372023-11-11 Birds of a feather flock together: a dataset for Clock and Adcyap1 genes from migration genetics studies Le Clercq, Louis-Stéphane Bazzi, Gaia Ferrer Obiol, Joan Cecere, Jacopo G. Gianfranceschi, Luca Grobler, J. Paul Kotzé, Antoinette Riutort León, Marta González-Solís, Jacob Rubolini, Diego Liedvogel, Miriam Dalton, Desiré Lee Sci Data Data Descriptor Birds in seasonal habitats rely on intricate strategies for optimal timing of migrations. This is governed by environmental cues, including photoperiod. Genetic factors affecting intrinsic timekeeping mechanisms, such as circadian clock genes, have been explored, yielding inconsistent findings with potential lineage-dependency. To clarify this evidence, a systematic review and phylogenetic reanalysis was done. This descriptor outlines the methodology for sourcing, screening, and processing relevant literature and data. PRISMA guidelines were followed, ultimately including 66 studies, with 34 focusing on candidate genes at the genotype-phenotype interface. Studies were clustered using bibliographic coupling and citation network analysis, alongside scientometric analyses by publication year and location. Data was retrieved for allele data from databases, article supplements, and direct author communications. The dataset, version 1.0.2, encompasses data from 52 species, with 46 species for the Clock gene and 43 for the Adcyap1 gene. This dataset, featuring data from over 8000 birds, constitutes the most extensive cross-species collection for these candidate genes, used in studies investigating gene polymorphisms and seasonal bird migration. Nature Publishing Group UK 2023-11-09 /pmc/articles/PMC10636037/ /pubmed/37945571 http://dx.doi.org/10.1038/s41597-023-02717-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Le Clercq, Louis-Stéphane Bazzi, Gaia Ferrer Obiol, Joan Cecere, Jacopo G. Gianfranceschi, Luca Grobler, J. Paul Kotzé, Antoinette Riutort León, Marta González-Solís, Jacob Rubolini, Diego Liedvogel, Miriam Dalton, Desiré Lee Birds of a feather flock together: a dataset for Clock and Adcyap1 genes from migration genetics studies |
title | Birds of a feather flock together: a dataset for Clock and Adcyap1 genes from migration genetics studies |
title_full | Birds of a feather flock together: a dataset for Clock and Adcyap1 genes from migration genetics studies |
title_fullStr | Birds of a feather flock together: a dataset for Clock and Adcyap1 genes from migration genetics studies |
title_full_unstemmed | Birds of a feather flock together: a dataset for Clock and Adcyap1 genes from migration genetics studies |
title_short | Birds of a feather flock together: a dataset for Clock and Adcyap1 genes from migration genetics studies |
title_sort | birds of a feather flock together: a dataset for clock and adcyap1 genes from migration genetics studies |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10636037/ https://www.ncbi.nlm.nih.gov/pubmed/37945571 http://dx.doi.org/10.1038/s41597-023-02717-8 |
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