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Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh

OBJECTIVE: Whole genome sequencing (WGS) of Aeromonas veronii Alim_AV_1000 isolated from ulcerative lesions of Shing fish (stringing catfish; Heteropneustes fossilis) was performed during the outbreak year 2021. MATERIALS AND METHODS: Using next-generation sequencing (Illumina) technology, WGS was a...

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Autores principales: Rahman, Mohummad Muklesur, Sadekuzzaman, Mohammad, Rahman, Md. Asikur, Siddique, Mahbubul Pratik, Uddin, Mohammad Asir, Haque, Md. Enamul, Chowdhury, Md. Golam Azam, Khasruzzaman, A. K. M., Rahman, Md. Tanvir, Hossain, Muhammad Tofazzal, Islam, Md. Alimul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: A periodical of the Network for the Veterinarians of Bangladesh (BDvetNET) 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10636080/
https://www.ncbi.nlm.nih.gov/pubmed/37969805
http://dx.doi.org/10.5455/javar.2023.j711
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author Rahman, Mohummad Muklesur
Sadekuzzaman, Mohammad
Rahman, Md. Asikur
Siddique, Mahbubul Pratik
Uddin, Mohammad Asir
Haque, Md. Enamul
Chowdhury, Md. Golam Azam
Khasruzzaman, A. K. M.
Rahman, Md. Tanvir
Hossain, Muhammad Tofazzal
Islam, Md. Alimul
author_facet Rahman, Mohummad Muklesur
Sadekuzzaman, Mohammad
Rahman, Md. Asikur
Siddique, Mahbubul Pratik
Uddin, Mohammad Asir
Haque, Md. Enamul
Chowdhury, Md. Golam Azam
Khasruzzaman, A. K. M.
Rahman, Md. Tanvir
Hossain, Muhammad Tofazzal
Islam, Md. Alimul
author_sort Rahman, Mohummad Muklesur
collection PubMed
description OBJECTIVE: Whole genome sequencing (WGS) of Aeromonas veronii Alim_AV_1000 isolated from ulcerative lesions of Shing fish (stringing catfish; Heteropneustes fossilis) was performed during the outbreak year 2021. MATERIALS AND METHODS: Using next-generation sequencing (Illumina) technology, WGS was accomplished, resulting in the sequencing, assembly, and analysis of the entire genome of the A. veronii strain. Moreover, the genomic features, virulence factors, antimicrobial resistome, and phylogenetic analysis for the molecular evolution of this strain were also examined. RESULTS: The genome size of the A. veronii Alim_AV_1000 strain was 4,494,515 bp, with an average G+C content of 58.87%. Annotation revealed the known transporters and genes linked to virulence, drug targets, and antimicrobial resistance. CONCLUSION: The findings of the phylogenetic analysis revealed that the strain of the present study has a close relationship with the China strain TH0426 and strain B56. This study provides novel information on A. veronii isolated from Shing fish in Bangladesh.
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spelling pubmed-106360802023-11-15 Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh Rahman, Mohummad Muklesur Sadekuzzaman, Mohammad Rahman, Md. Asikur Siddique, Mahbubul Pratik Uddin, Mohammad Asir Haque, Md. Enamul Chowdhury, Md. Golam Azam Khasruzzaman, A. K. M. Rahman, Md. Tanvir Hossain, Muhammad Tofazzal Islam, Md. Alimul J Adv Vet Anim Res Original Article OBJECTIVE: Whole genome sequencing (WGS) of Aeromonas veronii Alim_AV_1000 isolated from ulcerative lesions of Shing fish (stringing catfish; Heteropneustes fossilis) was performed during the outbreak year 2021. MATERIALS AND METHODS: Using next-generation sequencing (Illumina) technology, WGS was accomplished, resulting in the sequencing, assembly, and analysis of the entire genome of the A. veronii strain. Moreover, the genomic features, virulence factors, antimicrobial resistome, and phylogenetic analysis for the molecular evolution of this strain were also examined. RESULTS: The genome size of the A. veronii Alim_AV_1000 strain was 4,494,515 bp, with an average G+C content of 58.87%. Annotation revealed the known transporters and genes linked to virulence, drug targets, and antimicrobial resistance. CONCLUSION: The findings of the phylogenetic analysis revealed that the strain of the present study has a close relationship with the China strain TH0426 and strain B56. This study provides novel information on A. veronii isolated from Shing fish in Bangladesh. A periodical of the Network for the Veterinarians of Bangladesh (BDvetNET) 2023-09-30 /pmc/articles/PMC10636080/ /pubmed/37969805 http://dx.doi.org/10.5455/javar.2023.j711 Text en Copyright: © Journal of Advanced Veterinary and Animal Research https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution 4.0 License (http://creativecommons.org/licenses/by/4.0 (https://creativecommons.org/licenses/by/4.0/) )
spellingShingle Original Article
Rahman, Mohummad Muklesur
Sadekuzzaman, Mohammad
Rahman, Md. Asikur
Siddique, Mahbubul Pratik
Uddin, Mohammad Asir
Haque, Md. Enamul
Chowdhury, Md. Golam Azam
Khasruzzaman, A. K. M.
Rahman, Md. Tanvir
Hossain, Muhammad Tofazzal
Islam, Md. Alimul
Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh
title Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh
title_full Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh
title_fullStr Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh
title_full_unstemmed Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh
title_short Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh
title_sort complete genome sequence analysis of the multidrug resistant aeromonas veronii isolated for the first time from stinging catfish (shing fish) in bangladesh
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10636080/
https://www.ncbi.nlm.nih.gov/pubmed/37969805
http://dx.doi.org/10.5455/javar.2023.j711
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