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Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh
OBJECTIVE: Whole genome sequencing (WGS) of Aeromonas veronii Alim_AV_1000 isolated from ulcerative lesions of Shing fish (stringing catfish; Heteropneustes fossilis) was performed during the outbreak year 2021. MATERIALS AND METHODS: Using next-generation sequencing (Illumina) technology, WGS was a...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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A periodical of the Network for the Veterinarians of Bangladesh (BDvetNET)
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10636080/ https://www.ncbi.nlm.nih.gov/pubmed/37969805 http://dx.doi.org/10.5455/javar.2023.j711 |
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author | Rahman, Mohummad Muklesur Sadekuzzaman, Mohammad Rahman, Md. Asikur Siddique, Mahbubul Pratik Uddin, Mohammad Asir Haque, Md. Enamul Chowdhury, Md. Golam Azam Khasruzzaman, A. K. M. Rahman, Md. Tanvir Hossain, Muhammad Tofazzal Islam, Md. Alimul |
author_facet | Rahman, Mohummad Muklesur Sadekuzzaman, Mohammad Rahman, Md. Asikur Siddique, Mahbubul Pratik Uddin, Mohammad Asir Haque, Md. Enamul Chowdhury, Md. Golam Azam Khasruzzaman, A. K. M. Rahman, Md. Tanvir Hossain, Muhammad Tofazzal Islam, Md. Alimul |
author_sort | Rahman, Mohummad Muklesur |
collection | PubMed |
description | OBJECTIVE: Whole genome sequencing (WGS) of Aeromonas veronii Alim_AV_1000 isolated from ulcerative lesions of Shing fish (stringing catfish; Heteropneustes fossilis) was performed during the outbreak year 2021. MATERIALS AND METHODS: Using next-generation sequencing (Illumina) technology, WGS was accomplished, resulting in the sequencing, assembly, and analysis of the entire genome of the A. veronii strain. Moreover, the genomic features, virulence factors, antimicrobial resistome, and phylogenetic analysis for the molecular evolution of this strain were also examined. RESULTS: The genome size of the A. veronii Alim_AV_1000 strain was 4,494,515 bp, with an average G+C content of 58.87%. Annotation revealed the known transporters and genes linked to virulence, drug targets, and antimicrobial resistance. CONCLUSION: The findings of the phylogenetic analysis revealed that the strain of the present study has a close relationship with the China strain TH0426 and strain B56. This study provides novel information on A. veronii isolated from Shing fish in Bangladesh. |
format | Online Article Text |
id | pubmed-10636080 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | A periodical of the Network for the Veterinarians of Bangladesh (BDvetNET) |
record_format | MEDLINE/PubMed |
spelling | pubmed-106360802023-11-15 Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh Rahman, Mohummad Muklesur Sadekuzzaman, Mohammad Rahman, Md. Asikur Siddique, Mahbubul Pratik Uddin, Mohammad Asir Haque, Md. Enamul Chowdhury, Md. Golam Azam Khasruzzaman, A. K. M. Rahman, Md. Tanvir Hossain, Muhammad Tofazzal Islam, Md. Alimul J Adv Vet Anim Res Original Article OBJECTIVE: Whole genome sequencing (WGS) of Aeromonas veronii Alim_AV_1000 isolated from ulcerative lesions of Shing fish (stringing catfish; Heteropneustes fossilis) was performed during the outbreak year 2021. MATERIALS AND METHODS: Using next-generation sequencing (Illumina) technology, WGS was accomplished, resulting in the sequencing, assembly, and analysis of the entire genome of the A. veronii strain. Moreover, the genomic features, virulence factors, antimicrobial resistome, and phylogenetic analysis for the molecular evolution of this strain were also examined. RESULTS: The genome size of the A. veronii Alim_AV_1000 strain was 4,494,515 bp, with an average G+C content of 58.87%. Annotation revealed the known transporters and genes linked to virulence, drug targets, and antimicrobial resistance. CONCLUSION: The findings of the phylogenetic analysis revealed that the strain of the present study has a close relationship with the China strain TH0426 and strain B56. This study provides novel information on A. veronii isolated from Shing fish in Bangladesh. A periodical of the Network for the Veterinarians of Bangladesh (BDvetNET) 2023-09-30 /pmc/articles/PMC10636080/ /pubmed/37969805 http://dx.doi.org/10.5455/javar.2023.j711 Text en Copyright: © Journal of Advanced Veterinary and Animal Research https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution 4.0 License (http://creativecommons.org/licenses/by/4.0 (https://creativecommons.org/licenses/by/4.0/) ) |
spellingShingle | Original Article Rahman, Mohummad Muklesur Sadekuzzaman, Mohammad Rahman, Md. Asikur Siddique, Mahbubul Pratik Uddin, Mohammad Asir Haque, Md. Enamul Chowdhury, Md. Golam Azam Khasruzzaman, A. K. M. Rahman, Md. Tanvir Hossain, Muhammad Tofazzal Islam, Md. Alimul Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh |
title | Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh |
title_full | Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh |
title_fullStr | Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh |
title_full_unstemmed | Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh |
title_short | Complete genome sequence analysis of the multidrug resistant Aeromonas veronii isolated for the first time from stinging catfish (Shing fish) in Bangladesh |
title_sort | complete genome sequence analysis of the multidrug resistant aeromonas veronii isolated for the first time from stinging catfish (shing fish) in bangladesh |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10636080/ https://www.ncbi.nlm.nih.gov/pubmed/37969805 http://dx.doi.org/10.5455/javar.2023.j711 |
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