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Oxeiptosis core genes and their multi-omics analysis in hepatocellular carcinoma

Oxeiptosis is a recently discovered caspase-independent, non-inflammatory programmed cell death modality. Current studies suggest that oxeiptosis has crucial effects on biological processes in a variety of diseases. However, the mechanism of oxeiptosis in hepatocellular carcinoma (HCC) remains uncle...

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Autores principales: Lin, Sen, Li, Jinghao, Zhao, Ruiqi, Yu, Mengjiao, Peng, Lisheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10637422/
https://www.ncbi.nlm.nih.gov/pubmed/37960791
http://dx.doi.org/10.1097/MD.0000000000036051
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author Lin, Sen
Li, Jinghao
Zhao, Ruiqi
Yu, Mengjiao
Peng, Lisheng
author_facet Lin, Sen
Li, Jinghao
Zhao, Ruiqi
Yu, Mengjiao
Peng, Lisheng
author_sort Lin, Sen
collection PubMed
description Oxeiptosis is a recently discovered caspase-independent, non-inflammatory programmed cell death modality. Current studies suggest that oxeiptosis has crucial effects on biological processes in a variety of diseases. However, the mechanism of oxeiptosis in hepatocellular carcinoma (HCC) remains unclear and no relevant studies have been published. Therefore, this study is intended to investigate the mechanism and prognostic role of oxeiptosis-related genes in HCC. We explored the mechanisms and molecular phenotypes underlying the role of oxeiptosis in HCC through multi-omics analysis. Firstly, we obtained RNA-sequencing and clinical data from public database and divided the samples into trial and validation cohorts in subsequent analyses. We then screened oxeiptosis core genes (OCGs) and screened prognosis-related genes. Based on different molecular markers, we identified the molecular phenotypes of HCC, and the potential OCGs molecular mechanisms were explored. Subsequently, we construct a prognostic prediction system for HCC. Finally, we analyzed the tumor microenvironment and the immune escape phenomenon. We screened a total of 69 OCGs, most of which were prognostic risk factors for HCC. A majority of OCGs were enriched in cell cycle regulation and mitotic processes, which were related to both tumor cell proliferation and death. We identified 2 different molecular typing options with significant differences in prognosis, function, and signaling pathway enrichment between different molecular subtypes. The prognostic prediction model combined with molecular phenotypes and had a good predictive effect. Finally, we found CD4 + T-cell exhaustion in samples with specific molecular phenotypes. Through multi-omics analysis of OCGs, we not only revealed the possible molecular mechanisms of OCGs in HCC but also provided a prognostic prediction system for clinical application through molecular typing and risk scoring model. Meanwhile, we found immune escape mechanisms in HCC.
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spelling pubmed-106374222023-11-15 Oxeiptosis core genes and their multi-omics analysis in hepatocellular carcinoma Lin, Sen Li, Jinghao Zhao, Ruiqi Yu, Mengjiao Peng, Lisheng Medicine (Baltimore) 5700 Oxeiptosis is a recently discovered caspase-independent, non-inflammatory programmed cell death modality. Current studies suggest that oxeiptosis has crucial effects on biological processes in a variety of diseases. However, the mechanism of oxeiptosis in hepatocellular carcinoma (HCC) remains unclear and no relevant studies have been published. Therefore, this study is intended to investigate the mechanism and prognostic role of oxeiptosis-related genes in HCC. We explored the mechanisms and molecular phenotypes underlying the role of oxeiptosis in HCC through multi-omics analysis. Firstly, we obtained RNA-sequencing and clinical data from public database and divided the samples into trial and validation cohorts in subsequent analyses. We then screened oxeiptosis core genes (OCGs) and screened prognosis-related genes. Based on different molecular markers, we identified the molecular phenotypes of HCC, and the potential OCGs molecular mechanisms were explored. Subsequently, we construct a prognostic prediction system for HCC. Finally, we analyzed the tumor microenvironment and the immune escape phenomenon. We screened a total of 69 OCGs, most of which were prognostic risk factors for HCC. A majority of OCGs were enriched in cell cycle regulation and mitotic processes, which were related to both tumor cell proliferation and death. We identified 2 different molecular typing options with significant differences in prognosis, function, and signaling pathway enrichment between different molecular subtypes. The prognostic prediction model combined with molecular phenotypes and had a good predictive effect. Finally, we found CD4 + T-cell exhaustion in samples with specific molecular phenotypes. Through multi-omics analysis of OCGs, we not only revealed the possible molecular mechanisms of OCGs in HCC but also provided a prognostic prediction system for clinical application through molecular typing and risk scoring model. Meanwhile, we found immune escape mechanisms in HCC. Lippincott Williams & Wilkins 2023-11-10 /pmc/articles/PMC10637422/ /pubmed/37960791 http://dx.doi.org/10.1097/MD.0000000000036051 Text en Copyright © 2023 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial License 4.0 (CCBY-NC) (https://creativecommons.org/licenses/by-nc/4.0/) , where it is permissible to download, share, remix, transform, and buildup the work provided it is properly cited. The work cannot be used commercially without permission from the journal.
spellingShingle 5700
Lin, Sen
Li, Jinghao
Zhao, Ruiqi
Yu, Mengjiao
Peng, Lisheng
Oxeiptosis core genes and their multi-omics analysis in hepatocellular carcinoma
title Oxeiptosis core genes and their multi-omics analysis in hepatocellular carcinoma
title_full Oxeiptosis core genes and their multi-omics analysis in hepatocellular carcinoma
title_fullStr Oxeiptosis core genes and their multi-omics analysis in hepatocellular carcinoma
title_full_unstemmed Oxeiptosis core genes and their multi-omics analysis in hepatocellular carcinoma
title_short Oxeiptosis core genes and their multi-omics analysis in hepatocellular carcinoma
title_sort oxeiptosis core genes and their multi-omics analysis in hepatocellular carcinoma
topic 5700
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10637422/
https://www.ncbi.nlm.nih.gov/pubmed/37960791
http://dx.doi.org/10.1097/MD.0000000000036051
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