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A comprehensive prognostic and immunological analysis of telomere-related lncRNAs in kidney renal clear cell carcinoma
Kidney renal clear cell carcinoma (KIRC) is one of the most prevalent malignant tumors of the urinary system, with a high recurrence and metastasis rate. Telomeres and long non-coding RNAs (lncRNAs) have been documented playing critical roles in cancer progression. However, the prognostic significan...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10637817/ https://www.ncbi.nlm.nih.gov/pubmed/37847171 http://dx.doi.org/10.18632/aging.205056 |
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author | Chen, Ji Zhang, Dong Ren, Xiangbin Wang, Peng |
author_facet | Chen, Ji Zhang, Dong Ren, Xiangbin Wang, Peng |
author_sort | Chen, Ji |
collection | PubMed |
description | Kidney renal clear cell carcinoma (KIRC) is one of the most prevalent malignant tumors of the urinary system, with a high recurrence and metastasis rate. Telomeres and long non-coding RNAs (lncRNAs) have been documented playing critical roles in cancer progression. However, the prognostic significance of telomere-related lncRNA (TRLs) in KIRC is less well-defined. The Cancer Genome Atlas database was applied to retrieve the expression profiles and corresponding clinical information of KIRC patients. To create the TRLs prognostic signature, univariate Cox regression, least absolute shrinkage and selection operator analyses were performed. The prognostic signature, comprised of nine prognostic TRLs, was developed and demonstrated superior prognostic ability for KIRC patients. Additionally, the risk score acted as an independent prognostic indicator. A nomogram incorporating age, grade, stage, and signature-based risk scores was also developed and exhibited excellent predictive accuracy. Several immune activities were associated with the signature, as determined by gene function analysis. Further analysis revealed differences in the status of immunity and the tumor microenvironment between low- and high-risk groups. Notably, KIRC patients with high-risk scores were more responsive to immunotherapy and chemotherapy. To summarize, our study developed a new prognostic signature consisting of nine telomere-related lncRNA that can precisely predict the prognosis of KIRC patients. The signature was shown to be of substantial value for the tumor microenvironment and tumor mutation burden, thereby contributing to a framework for the individualized treatment of patients. |
format | Online Article Text |
id | pubmed-10637817 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-106378172023-11-15 A comprehensive prognostic and immunological analysis of telomere-related lncRNAs in kidney renal clear cell carcinoma Chen, Ji Zhang, Dong Ren, Xiangbin Wang, Peng Aging (Albany NY) Research Paper Kidney renal clear cell carcinoma (KIRC) is one of the most prevalent malignant tumors of the urinary system, with a high recurrence and metastasis rate. Telomeres and long non-coding RNAs (lncRNAs) have been documented playing critical roles in cancer progression. However, the prognostic significance of telomere-related lncRNA (TRLs) in KIRC is less well-defined. The Cancer Genome Atlas database was applied to retrieve the expression profiles and corresponding clinical information of KIRC patients. To create the TRLs prognostic signature, univariate Cox regression, least absolute shrinkage and selection operator analyses were performed. The prognostic signature, comprised of nine prognostic TRLs, was developed and demonstrated superior prognostic ability for KIRC patients. Additionally, the risk score acted as an independent prognostic indicator. A nomogram incorporating age, grade, stage, and signature-based risk scores was also developed and exhibited excellent predictive accuracy. Several immune activities were associated with the signature, as determined by gene function analysis. Further analysis revealed differences in the status of immunity and the tumor microenvironment between low- and high-risk groups. Notably, KIRC patients with high-risk scores were more responsive to immunotherapy and chemotherapy. To summarize, our study developed a new prognostic signature consisting of nine telomere-related lncRNA that can precisely predict the prognosis of KIRC patients. The signature was shown to be of substantial value for the tumor microenvironment and tumor mutation burden, thereby contributing to a framework for the individualized treatment of patients. Impact Journals 2023-10-16 /pmc/articles/PMC10637817/ /pubmed/37847171 http://dx.doi.org/10.18632/aging.205056 Text en Copyright: © 2023 Chen et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Chen, Ji Zhang, Dong Ren, Xiangbin Wang, Peng A comprehensive prognostic and immunological analysis of telomere-related lncRNAs in kidney renal clear cell carcinoma |
title | A comprehensive prognostic and immunological analysis of telomere-related lncRNAs in kidney renal clear cell carcinoma |
title_full | A comprehensive prognostic and immunological analysis of telomere-related lncRNAs in kidney renal clear cell carcinoma |
title_fullStr | A comprehensive prognostic and immunological analysis of telomere-related lncRNAs in kidney renal clear cell carcinoma |
title_full_unstemmed | A comprehensive prognostic and immunological analysis of telomere-related lncRNAs in kidney renal clear cell carcinoma |
title_short | A comprehensive prognostic and immunological analysis of telomere-related lncRNAs in kidney renal clear cell carcinoma |
title_sort | comprehensive prognostic and immunological analysis of telomere-related lncrnas in kidney renal clear cell carcinoma |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10637817/ https://www.ncbi.nlm.nih.gov/pubmed/37847171 http://dx.doi.org/10.18632/aging.205056 |
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