Cargando…

A comprehensive prognostic and immunological analysis of telomere-related lncRNAs in kidney renal clear cell carcinoma

Kidney renal clear cell carcinoma (KIRC) is one of the most prevalent malignant tumors of the urinary system, with a high recurrence and metastasis rate. Telomeres and long non-coding RNAs (lncRNAs) have been documented playing critical roles in cancer progression. However, the prognostic significan...

Descripción completa

Detalles Bibliográficos
Autores principales: Chen, Ji, Zhang, Dong, Ren, Xiangbin, Wang, Peng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10637817/
https://www.ncbi.nlm.nih.gov/pubmed/37847171
http://dx.doi.org/10.18632/aging.205056
_version_ 1785146542788706304
author Chen, Ji
Zhang, Dong
Ren, Xiangbin
Wang, Peng
author_facet Chen, Ji
Zhang, Dong
Ren, Xiangbin
Wang, Peng
author_sort Chen, Ji
collection PubMed
description Kidney renal clear cell carcinoma (KIRC) is one of the most prevalent malignant tumors of the urinary system, with a high recurrence and metastasis rate. Telomeres and long non-coding RNAs (lncRNAs) have been documented playing critical roles in cancer progression. However, the prognostic significance of telomere-related lncRNA (TRLs) in KIRC is less well-defined. The Cancer Genome Atlas database was applied to retrieve the expression profiles and corresponding clinical information of KIRC patients. To create the TRLs prognostic signature, univariate Cox regression, least absolute shrinkage and selection operator analyses were performed. The prognostic signature, comprised of nine prognostic TRLs, was developed and demonstrated superior prognostic ability for KIRC patients. Additionally, the risk score acted as an independent prognostic indicator. A nomogram incorporating age, grade, stage, and signature-based risk scores was also developed and exhibited excellent predictive accuracy. Several immune activities were associated with the signature, as determined by gene function analysis. Further analysis revealed differences in the status of immunity and the tumor microenvironment between low- and high-risk groups. Notably, KIRC patients with high-risk scores were more responsive to immunotherapy and chemotherapy. To summarize, our study developed a new prognostic signature consisting of nine telomere-related lncRNA that can precisely predict the prognosis of KIRC patients. The signature was shown to be of substantial value for the tumor microenvironment and tumor mutation burden, thereby contributing to a framework for the individualized treatment of patients.
format Online
Article
Text
id pubmed-10637817
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Impact Journals
record_format MEDLINE/PubMed
spelling pubmed-106378172023-11-15 A comprehensive prognostic and immunological analysis of telomere-related lncRNAs in kidney renal clear cell carcinoma Chen, Ji Zhang, Dong Ren, Xiangbin Wang, Peng Aging (Albany NY) Research Paper Kidney renal clear cell carcinoma (KIRC) is one of the most prevalent malignant tumors of the urinary system, with a high recurrence and metastasis rate. Telomeres and long non-coding RNAs (lncRNAs) have been documented playing critical roles in cancer progression. However, the prognostic significance of telomere-related lncRNA (TRLs) in KIRC is less well-defined. The Cancer Genome Atlas database was applied to retrieve the expression profiles and corresponding clinical information of KIRC patients. To create the TRLs prognostic signature, univariate Cox regression, least absolute shrinkage and selection operator analyses were performed. The prognostic signature, comprised of nine prognostic TRLs, was developed and demonstrated superior prognostic ability for KIRC patients. Additionally, the risk score acted as an independent prognostic indicator. A nomogram incorporating age, grade, stage, and signature-based risk scores was also developed and exhibited excellent predictive accuracy. Several immune activities were associated with the signature, as determined by gene function analysis. Further analysis revealed differences in the status of immunity and the tumor microenvironment between low- and high-risk groups. Notably, KIRC patients with high-risk scores were more responsive to immunotherapy and chemotherapy. To summarize, our study developed a new prognostic signature consisting of nine telomere-related lncRNA that can precisely predict the prognosis of KIRC patients. The signature was shown to be of substantial value for the tumor microenvironment and tumor mutation burden, thereby contributing to a framework for the individualized treatment of patients. Impact Journals 2023-10-16 /pmc/articles/PMC10637817/ /pubmed/37847171 http://dx.doi.org/10.18632/aging.205056 Text en Copyright: © 2023 Chen et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Chen, Ji
Zhang, Dong
Ren, Xiangbin
Wang, Peng
A comprehensive prognostic and immunological analysis of telomere-related lncRNAs in kidney renal clear cell carcinoma
title A comprehensive prognostic and immunological analysis of telomere-related lncRNAs in kidney renal clear cell carcinoma
title_full A comprehensive prognostic and immunological analysis of telomere-related lncRNAs in kidney renal clear cell carcinoma
title_fullStr A comprehensive prognostic and immunological analysis of telomere-related lncRNAs in kidney renal clear cell carcinoma
title_full_unstemmed A comprehensive prognostic and immunological analysis of telomere-related lncRNAs in kidney renal clear cell carcinoma
title_short A comprehensive prognostic and immunological analysis of telomere-related lncRNAs in kidney renal clear cell carcinoma
title_sort comprehensive prognostic and immunological analysis of telomere-related lncrnas in kidney renal clear cell carcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10637817/
https://www.ncbi.nlm.nih.gov/pubmed/37847171
http://dx.doi.org/10.18632/aging.205056
work_keys_str_mv AT chenji acomprehensiveprognosticandimmunologicalanalysisoftelomererelatedlncrnasinkidneyrenalclearcellcarcinoma
AT zhangdong acomprehensiveprognosticandimmunologicalanalysisoftelomererelatedlncrnasinkidneyrenalclearcellcarcinoma
AT renxiangbin acomprehensiveprognosticandimmunologicalanalysisoftelomererelatedlncrnasinkidneyrenalclearcellcarcinoma
AT wangpeng acomprehensiveprognosticandimmunologicalanalysisoftelomererelatedlncrnasinkidneyrenalclearcellcarcinoma
AT chenji comprehensiveprognosticandimmunologicalanalysisoftelomererelatedlncrnasinkidneyrenalclearcellcarcinoma
AT zhangdong comprehensiveprognosticandimmunologicalanalysisoftelomererelatedlncrnasinkidneyrenalclearcellcarcinoma
AT renxiangbin comprehensiveprognosticandimmunologicalanalysisoftelomererelatedlncrnasinkidneyrenalclearcellcarcinoma
AT wangpeng comprehensiveprognosticandimmunologicalanalysisoftelomererelatedlncrnasinkidneyrenalclearcellcarcinoma