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Role of PPAR-related genes in chronic heart failure: evidence from large populations

BACKGROUND: The role of PPAR signaling and its associated genes in the pathogenesis and progression of chronic heart failure (CHF) remains elusive. METHODS: We accessed the gene expression profile and relevant baseline information of CHF samples from the Gene Expression Omnibus (GEO) database, speci...

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Autores principales: Ke, Zun-Ping, Tao, Wen-Qi, Zhao, Gang, Cheng, Kuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10638691/
https://www.ncbi.nlm.nih.gov/pubmed/37950149
http://dx.doi.org/10.1186/s12872-023-03554-8
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author Ke, Zun-Ping
Tao, Wen-Qi
Zhao, Gang
Cheng, Kuan
author_facet Ke, Zun-Ping
Tao, Wen-Qi
Zhao, Gang
Cheng, Kuan
author_sort Ke, Zun-Ping
collection PubMed
description BACKGROUND: The role of PPAR signaling and its associated genes in the pathogenesis and progression of chronic heart failure (CHF) remains elusive. METHODS: We accessed the gene expression profile and relevant baseline information of CHF samples from the Gene Expression Omnibus (GEO) database, specifically from the GSE57338 project. RESULTS: From GSE57338 project, we derived the expression value of 126 PPAR-related genes. A protein-protein interaction network was then established to illustrate potential protein interactions. ClueGO analysis results revealed that these genes predominantly participate in functions such as export across plasma membrane, regulation of lipid metabolic process, fatty acid metabolism, circulatory system vascular processes, alcohol metabolism, triglyceride metabolism and regulation of lipid localization and response to nutrient. Using the cytohubba plug-in in Cytoscape, we pinpointed ACADM, PPARG and CPT2 as potential central molecules in HF pathogenesis and progression. Subsequent Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analysis delved into the potential biological role of these three genes in CHF. Immune infiltration analysis suggested that the infiltration level of neutrophils and M2 macrophages might be notably influenced by these genes, thereby playing a role in the CHF mechanism. CONCLUSIONS: Our research provides a comprehensive insight into the significance of PPAR associated genes in CHF development. Notably, the genes ACADM, PPARG and CPT2 emerged as potential targets for clinical interventions. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12872-023-03554-8.
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spelling pubmed-106386912023-11-11 Role of PPAR-related genes in chronic heart failure: evidence from large populations Ke, Zun-Ping Tao, Wen-Qi Zhao, Gang Cheng, Kuan BMC Cardiovasc Disord Research BACKGROUND: The role of PPAR signaling and its associated genes in the pathogenesis and progression of chronic heart failure (CHF) remains elusive. METHODS: We accessed the gene expression profile and relevant baseline information of CHF samples from the Gene Expression Omnibus (GEO) database, specifically from the GSE57338 project. RESULTS: From GSE57338 project, we derived the expression value of 126 PPAR-related genes. A protein-protein interaction network was then established to illustrate potential protein interactions. ClueGO analysis results revealed that these genes predominantly participate in functions such as export across plasma membrane, regulation of lipid metabolic process, fatty acid metabolism, circulatory system vascular processes, alcohol metabolism, triglyceride metabolism and regulation of lipid localization and response to nutrient. Using the cytohubba plug-in in Cytoscape, we pinpointed ACADM, PPARG and CPT2 as potential central molecules in HF pathogenesis and progression. Subsequent Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analysis delved into the potential biological role of these three genes in CHF. Immune infiltration analysis suggested that the infiltration level of neutrophils and M2 macrophages might be notably influenced by these genes, thereby playing a role in the CHF mechanism. CONCLUSIONS: Our research provides a comprehensive insight into the significance of PPAR associated genes in CHF development. Notably, the genes ACADM, PPARG and CPT2 emerged as potential targets for clinical interventions. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12872-023-03554-8. BioMed Central 2023-11-10 /pmc/articles/PMC10638691/ /pubmed/37950149 http://dx.doi.org/10.1186/s12872-023-03554-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Ke, Zun-Ping
Tao, Wen-Qi
Zhao, Gang
Cheng, Kuan
Role of PPAR-related genes in chronic heart failure: evidence from large populations
title Role of PPAR-related genes in chronic heart failure: evidence from large populations
title_full Role of PPAR-related genes in chronic heart failure: evidence from large populations
title_fullStr Role of PPAR-related genes in chronic heart failure: evidence from large populations
title_full_unstemmed Role of PPAR-related genes in chronic heart failure: evidence from large populations
title_short Role of PPAR-related genes in chronic heart failure: evidence from large populations
title_sort role of ppar-related genes in chronic heart failure: evidence from large populations
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10638691/
https://www.ncbi.nlm.nih.gov/pubmed/37950149
http://dx.doi.org/10.1186/s12872-023-03554-8
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