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Role of PPAR-related genes in chronic heart failure: evidence from large populations
BACKGROUND: The role of PPAR signaling and its associated genes in the pathogenesis and progression of chronic heart failure (CHF) remains elusive. METHODS: We accessed the gene expression profile and relevant baseline information of CHF samples from the Gene Expression Omnibus (GEO) database, speci...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10638691/ https://www.ncbi.nlm.nih.gov/pubmed/37950149 http://dx.doi.org/10.1186/s12872-023-03554-8 |
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author | Ke, Zun-Ping Tao, Wen-Qi Zhao, Gang Cheng, Kuan |
author_facet | Ke, Zun-Ping Tao, Wen-Qi Zhao, Gang Cheng, Kuan |
author_sort | Ke, Zun-Ping |
collection | PubMed |
description | BACKGROUND: The role of PPAR signaling and its associated genes in the pathogenesis and progression of chronic heart failure (CHF) remains elusive. METHODS: We accessed the gene expression profile and relevant baseline information of CHF samples from the Gene Expression Omnibus (GEO) database, specifically from the GSE57338 project. RESULTS: From GSE57338 project, we derived the expression value of 126 PPAR-related genes. A protein-protein interaction network was then established to illustrate potential protein interactions. ClueGO analysis results revealed that these genes predominantly participate in functions such as export across plasma membrane, regulation of lipid metabolic process, fatty acid metabolism, circulatory system vascular processes, alcohol metabolism, triglyceride metabolism and regulation of lipid localization and response to nutrient. Using the cytohubba plug-in in Cytoscape, we pinpointed ACADM, PPARG and CPT2 as potential central molecules in HF pathogenesis and progression. Subsequent Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analysis delved into the potential biological role of these three genes in CHF. Immune infiltration analysis suggested that the infiltration level of neutrophils and M2 macrophages might be notably influenced by these genes, thereby playing a role in the CHF mechanism. CONCLUSIONS: Our research provides a comprehensive insight into the significance of PPAR associated genes in CHF development. Notably, the genes ACADM, PPARG and CPT2 emerged as potential targets for clinical interventions. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12872-023-03554-8. |
format | Online Article Text |
id | pubmed-10638691 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-106386912023-11-11 Role of PPAR-related genes in chronic heart failure: evidence from large populations Ke, Zun-Ping Tao, Wen-Qi Zhao, Gang Cheng, Kuan BMC Cardiovasc Disord Research BACKGROUND: The role of PPAR signaling and its associated genes in the pathogenesis and progression of chronic heart failure (CHF) remains elusive. METHODS: We accessed the gene expression profile and relevant baseline information of CHF samples from the Gene Expression Omnibus (GEO) database, specifically from the GSE57338 project. RESULTS: From GSE57338 project, we derived the expression value of 126 PPAR-related genes. A protein-protein interaction network was then established to illustrate potential protein interactions. ClueGO analysis results revealed that these genes predominantly participate in functions such as export across plasma membrane, regulation of lipid metabolic process, fatty acid metabolism, circulatory system vascular processes, alcohol metabolism, triglyceride metabolism and regulation of lipid localization and response to nutrient. Using the cytohubba plug-in in Cytoscape, we pinpointed ACADM, PPARG and CPT2 as potential central molecules in HF pathogenesis and progression. Subsequent Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analysis delved into the potential biological role of these three genes in CHF. Immune infiltration analysis suggested that the infiltration level of neutrophils and M2 macrophages might be notably influenced by these genes, thereby playing a role in the CHF mechanism. CONCLUSIONS: Our research provides a comprehensive insight into the significance of PPAR associated genes in CHF development. Notably, the genes ACADM, PPARG and CPT2 emerged as potential targets for clinical interventions. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12872-023-03554-8. BioMed Central 2023-11-10 /pmc/articles/PMC10638691/ /pubmed/37950149 http://dx.doi.org/10.1186/s12872-023-03554-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Ke, Zun-Ping Tao, Wen-Qi Zhao, Gang Cheng, Kuan Role of PPAR-related genes in chronic heart failure: evidence from large populations |
title | Role of PPAR-related genes in chronic heart failure: evidence from large populations |
title_full | Role of PPAR-related genes in chronic heart failure: evidence from large populations |
title_fullStr | Role of PPAR-related genes in chronic heart failure: evidence from large populations |
title_full_unstemmed | Role of PPAR-related genes in chronic heart failure: evidence from large populations |
title_short | Role of PPAR-related genes in chronic heart failure: evidence from large populations |
title_sort | role of ppar-related genes in chronic heart failure: evidence from large populations |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10638691/ https://www.ncbi.nlm.nih.gov/pubmed/37950149 http://dx.doi.org/10.1186/s12872-023-03554-8 |
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