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AL360181.1 promotes proliferation and invasion in colon cancer and is one of ten m6A-related lncRNAs that predict overall survival

BACKGROUND: N6-methyladenosine (m6A) exerted a pivotal role in colon cancer. Nevertheless, the long non-coding RNAs (lncRNAs) associated with this process have yet to be elucidated. METHODS: The open-access data used for analysis was downloaded from The Cancer Genome Atlas (TCGA) database for analys...

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Autores principales: Luo, Yi, Xie, Yayun, Wu, Dejun, Wang, Bingyi, Lu, Helei, Wang, Zhiqiang, Quan, Yingjun, Han, Bo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10638913/
https://www.ncbi.nlm.nih.gov/pubmed/37953780
http://dx.doi.org/10.7717/peerj.16123
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author Luo, Yi
Xie, Yayun
Wu, Dejun
Wang, Bingyi
Lu, Helei
Wang, Zhiqiang
Quan, Yingjun
Han, Bo
author_facet Luo, Yi
Xie, Yayun
Wu, Dejun
Wang, Bingyi
Lu, Helei
Wang, Zhiqiang
Quan, Yingjun
Han, Bo
author_sort Luo, Yi
collection PubMed
description BACKGROUND: N6-methyladenosine (m6A) exerted a pivotal role in colon cancer. Nevertheless, the long non-coding RNAs (lncRNAs) associated with this process have yet to be elucidated. METHODS: The open-access data used for analysis was downloaded from The Cancer Genome Atlas (TCGA) database for analysis, employing the R software for computational evaluations. The RNA level of specific molecules was assessed using the quantitative real-time PCR. CCK8, colony formation and transwell assay were used to evaluate the proliferation, invasion and migration ability of colon cancer cells. RESULTS: Here, we identified the m6A regulators from TCGA data and subsequently pinpointed lncRNAs with a —Cor— > 0.3 and P < 0.05, categorizing them as m6A-associated lncRNAs. Moreover, we formulated a prognosis signature rooted in ten m6A-related lncRNAs, consisting of AL360181.1, PCAT6, SNHG26, AC016876.1, AC104667.2, AL114730.3, LINC02257, AC147067.1, AP006621.3 and AC009237.14. This signature exhibited notable predictive accuracy in gauging patient survival. Immune-related evaluations revealed varied immune cell infiltration patterns across different risk groups, with our findings suggesting superior immunotherapy response in low-risk patients. Biological enrichment analysis indicated that the high-risk patients had a higher activity of multiple carcinogenic pathways, including glycolysis. The previously unreported lncRNA, AL360181.1, displayed a connection to glycolytic activity and diminished survival rates, warranting further investigation. The result indicated that AL360181.1 was correlated with more aggressive clinical characteristics. Immune infiltration assessments found AL360181.1 to have a positive correlation with Tcm infiltration, but an inverse relationship with entities like Th2 cells, T cells, neutrophils and macrophages. Biological enrichment analysis indicated that the pathways of WNT/β-catenin, pancreas beta cells, hedgehog signaling and some metabolism pathways were upregulated in high AL360181.1 patients. In vitro experiments showed that AL360181.1 was upregulated in the colon cancer cells. Moreover, AL360181.1 significantly promotes the proliferation, invasion and migration of colon cancer cells. CONCLUSIONS: Our results can provide direction for future studies on m6A-related lncRNA in colon cancer.
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spelling pubmed-106389132023-11-11 AL360181.1 promotes proliferation and invasion in colon cancer and is one of ten m6A-related lncRNAs that predict overall survival Luo, Yi Xie, Yayun Wu, Dejun Wang, Bingyi Lu, Helei Wang, Zhiqiang Quan, Yingjun Han, Bo PeerJ Bioinformatics BACKGROUND: N6-methyladenosine (m6A) exerted a pivotal role in colon cancer. Nevertheless, the long non-coding RNAs (lncRNAs) associated with this process have yet to be elucidated. METHODS: The open-access data used for analysis was downloaded from The Cancer Genome Atlas (TCGA) database for analysis, employing the R software for computational evaluations. The RNA level of specific molecules was assessed using the quantitative real-time PCR. CCK8, colony formation and transwell assay were used to evaluate the proliferation, invasion and migration ability of colon cancer cells. RESULTS: Here, we identified the m6A regulators from TCGA data and subsequently pinpointed lncRNAs with a —Cor— > 0.3 and P < 0.05, categorizing them as m6A-associated lncRNAs. Moreover, we formulated a prognosis signature rooted in ten m6A-related lncRNAs, consisting of AL360181.1, PCAT6, SNHG26, AC016876.1, AC104667.2, AL114730.3, LINC02257, AC147067.1, AP006621.3 and AC009237.14. This signature exhibited notable predictive accuracy in gauging patient survival. Immune-related evaluations revealed varied immune cell infiltration patterns across different risk groups, with our findings suggesting superior immunotherapy response in low-risk patients. Biological enrichment analysis indicated that the high-risk patients had a higher activity of multiple carcinogenic pathways, including glycolysis. The previously unreported lncRNA, AL360181.1, displayed a connection to glycolytic activity and diminished survival rates, warranting further investigation. The result indicated that AL360181.1 was correlated with more aggressive clinical characteristics. Immune infiltration assessments found AL360181.1 to have a positive correlation with Tcm infiltration, but an inverse relationship with entities like Th2 cells, T cells, neutrophils and macrophages. Biological enrichment analysis indicated that the pathways of WNT/β-catenin, pancreas beta cells, hedgehog signaling and some metabolism pathways were upregulated in high AL360181.1 patients. In vitro experiments showed that AL360181.1 was upregulated in the colon cancer cells. Moreover, AL360181.1 significantly promotes the proliferation, invasion and migration of colon cancer cells. CONCLUSIONS: Our results can provide direction for future studies on m6A-related lncRNA in colon cancer. PeerJ Inc. 2023-11-08 /pmc/articles/PMC10638913/ /pubmed/37953780 http://dx.doi.org/10.7717/peerj.16123 Text en ©2023 Luo et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Luo, Yi
Xie, Yayun
Wu, Dejun
Wang, Bingyi
Lu, Helei
Wang, Zhiqiang
Quan, Yingjun
Han, Bo
AL360181.1 promotes proliferation and invasion in colon cancer and is one of ten m6A-related lncRNAs that predict overall survival
title AL360181.1 promotes proliferation and invasion in colon cancer and is one of ten m6A-related lncRNAs that predict overall survival
title_full AL360181.1 promotes proliferation and invasion in colon cancer and is one of ten m6A-related lncRNAs that predict overall survival
title_fullStr AL360181.1 promotes proliferation and invasion in colon cancer and is one of ten m6A-related lncRNAs that predict overall survival
title_full_unstemmed AL360181.1 promotes proliferation and invasion in colon cancer and is one of ten m6A-related lncRNAs that predict overall survival
title_short AL360181.1 promotes proliferation and invasion in colon cancer and is one of ten m6A-related lncRNAs that predict overall survival
title_sort al360181.1 promotes proliferation and invasion in colon cancer and is one of ten m6a-related lncrnas that predict overall survival
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10638913/
https://www.ncbi.nlm.nih.gov/pubmed/37953780
http://dx.doi.org/10.7717/peerj.16123
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