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Predicting early breast cancer recurrence from histopathological images in the Carolina Breast Cancer Study

Approaches for rapidly identifying patients at high risk of early breast cancer recurrence are needed. Image-based methods for prescreening hematoxylin and eosin (H&E) stained tumor slides could offer temporal and financial efficiency. We evaluated a data set of 704 1-mm tumor core H&E image...

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Autores principales: Shi, Yifeng, Olsson, Linnea T., Hoadley, Katherine A., Calhoun, Benjamin C., Marron, J. S., Geradts, Joseph, Niethammer, Marc, Troester, Melissa A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10640636/
https://www.ncbi.nlm.nih.gov/pubmed/37952058
http://dx.doi.org/10.1038/s41523-023-00597-0
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author Shi, Yifeng
Olsson, Linnea T.
Hoadley, Katherine A.
Calhoun, Benjamin C.
Marron, J. S.
Geradts, Joseph
Niethammer, Marc
Troester, Melissa A.
author_facet Shi, Yifeng
Olsson, Linnea T.
Hoadley, Katherine A.
Calhoun, Benjamin C.
Marron, J. S.
Geradts, Joseph
Niethammer, Marc
Troester, Melissa A.
author_sort Shi, Yifeng
collection PubMed
description Approaches for rapidly identifying patients at high risk of early breast cancer recurrence are needed. Image-based methods for prescreening hematoxylin and eosin (H&E) stained tumor slides could offer temporal and financial efficiency. We evaluated a data set of 704 1-mm tumor core H&E images (2–4 cores per case), corresponding to 202 participants (101 who recurred; 101 non-recurrent matched on age and follow-up time) from breast cancers diagnosed between 2008–2012 in the Carolina Breast Cancer Study. We leveraged deep learning to extract image information and trained a model to identify recurrence. Cross-validation accuracy for predicting recurrence was 62.4% [95% CI: 55.7, 69.1], similar to grade (65.8% [95% CI: 59.3, 72.3]) and ER status (66.3% [95% CI: 59.8, 72.8]). Interestingly, 70% (19/27) of early-recurrent low-intermediate grade tumors were identified by our image model. Relative to existing markers, image-based analyses provide complementary information for predicting early recurrence.
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spelling pubmed-106406362023-11-11 Predicting early breast cancer recurrence from histopathological images in the Carolina Breast Cancer Study Shi, Yifeng Olsson, Linnea T. Hoadley, Katherine A. Calhoun, Benjamin C. Marron, J. S. Geradts, Joseph Niethammer, Marc Troester, Melissa A. NPJ Breast Cancer Article Approaches for rapidly identifying patients at high risk of early breast cancer recurrence are needed. Image-based methods for prescreening hematoxylin and eosin (H&E) stained tumor slides could offer temporal and financial efficiency. We evaluated a data set of 704 1-mm tumor core H&E images (2–4 cores per case), corresponding to 202 participants (101 who recurred; 101 non-recurrent matched on age and follow-up time) from breast cancers diagnosed between 2008–2012 in the Carolina Breast Cancer Study. We leveraged deep learning to extract image information and trained a model to identify recurrence. Cross-validation accuracy for predicting recurrence was 62.4% [95% CI: 55.7, 69.1], similar to grade (65.8% [95% CI: 59.3, 72.3]) and ER status (66.3% [95% CI: 59.8, 72.8]). Interestingly, 70% (19/27) of early-recurrent low-intermediate grade tumors were identified by our image model. Relative to existing markers, image-based analyses provide complementary information for predicting early recurrence. Nature Publishing Group UK 2023-11-11 /pmc/articles/PMC10640636/ /pubmed/37952058 http://dx.doi.org/10.1038/s41523-023-00597-0 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Shi, Yifeng
Olsson, Linnea T.
Hoadley, Katherine A.
Calhoun, Benjamin C.
Marron, J. S.
Geradts, Joseph
Niethammer, Marc
Troester, Melissa A.
Predicting early breast cancer recurrence from histopathological images in the Carolina Breast Cancer Study
title Predicting early breast cancer recurrence from histopathological images in the Carolina Breast Cancer Study
title_full Predicting early breast cancer recurrence from histopathological images in the Carolina Breast Cancer Study
title_fullStr Predicting early breast cancer recurrence from histopathological images in the Carolina Breast Cancer Study
title_full_unstemmed Predicting early breast cancer recurrence from histopathological images in the Carolina Breast Cancer Study
title_short Predicting early breast cancer recurrence from histopathological images in the Carolina Breast Cancer Study
title_sort predicting early breast cancer recurrence from histopathological images in the carolina breast cancer study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10640636/
https://www.ncbi.nlm.nih.gov/pubmed/37952058
http://dx.doi.org/10.1038/s41523-023-00597-0
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