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A comparative study on point cloud down-sampling strategies for deep learning-based crop organ segmentation

The 3D crop data obtained during cultivation is of great significance to screening excellent varieties in modern breeding and improvement on crop yield. With the rapid development of deep learning, researchers have been making innovations in aspects of both data preparation and deep network design f...

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Autores principales: Li, Dawei, Wei, Yongchang, Zhu, Rongsheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10640751/
https://www.ncbi.nlm.nih.gov/pubmed/37951912
http://dx.doi.org/10.1186/s13007-023-01099-7
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author Li, Dawei
Wei, Yongchang
Zhu, Rongsheng
author_facet Li, Dawei
Wei, Yongchang
Zhu, Rongsheng
author_sort Li, Dawei
collection PubMed
description The 3D crop data obtained during cultivation is of great significance to screening excellent varieties in modern breeding and improvement on crop yield. With the rapid development of deep learning, researchers have been making innovations in aspects of both data preparation and deep network design for segmenting plant organs from 3D data. Training of the deep learning network requires the input point cloud to have a fixed scale, which means all point clouds in the batch should have similar scale and contain the same number of points. A good down-sampling strategy can reduce the impact of noise and meanwhile preserve the most important 3D spatial structures. As far as we know, this work is the first comprehensive study of the relationship between multiple down-sampling strategies and the performances of popular networks for plant point clouds. Five down-sampling strategies (including FPS, RS, UVS, VFPS, and 3DEPS) are cross evaluated on five different segmentation networks (including PointNet +  + , DGCNN, PlantNet, ASIS, and PSegNet). The overall experimental results show that currently there is no strict golden rule on fixing down-sampling strategy for a specific mainstream crop deep learning network, and the optimal down-sampling strategy may vary on different networks. However, some general experience for choosing an appropriate sampling method for a specific network can still be summarized from the qualitative and quantitative experiments. First, 3DEPS and UVS are easy to generate better results on semantic segmentation networks. Second, the voxel-based down-sampling strategies may be more suitable for complex dual-function networks. Third, at 4096-point resolution, 3DEPS usually has only a small margin compared with the best down-sampling strategy at most cases, which means 3DEPS may be the most stable strategy across all compared. This study not only helps to further improve the accuracy of point cloud deep learning networks for crop organ segmentation, but also gives clue to the alignment of down-sampling strategies and a specific network.
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spelling pubmed-106407512023-11-11 A comparative study on point cloud down-sampling strategies for deep learning-based crop organ segmentation Li, Dawei Wei, Yongchang Zhu, Rongsheng Plant Methods Research The 3D crop data obtained during cultivation is of great significance to screening excellent varieties in modern breeding and improvement on crop yield. With the rapid development of deep learning, researchers have been making innovations in aspects of both data preparation and deep network design for segmenting plant organs from 3D data. Training of the deep learning network requires the input point cloud to have a fixed scale, which means all point clouds in the batch should have similar scale and contain the same number of points. A good down-sampling strategy can reduce the impact of noise and meanwhile preserve the most important 3D spatial structures. As far as we know, this work is the first comprehensive study of the relationship between multiple down-sampling strategies and the performances of popular networks for plant point clouds. Five down-sampling strategies (including FPS, RS, UVS, VFPS, and 3DEPS) are cross evaluated on five different segmentation networks (including PointNet +  + , DGCNN, PlantNet, ASIS, and PSegNet). The overall experimental results show that currently there is no strict golden rule on fixing down-sampling strategy for a specific mainstream crop deep learning network, and the optimal down-sampling strategy may vary on different networks. However, some general experience for choosing an appropriate sampling method for a specific network can still be summarized from the qualitative and quantitative experiments. First, 3DEPS and UVS are easy to generate better results on semantic segmentation networks. Second, the voxel-based down-sampling strategies may be more suitable for complex dual-function networks. Third, at 4096-point resolution, 3DEPS usually has only a small margin compared with the best down-sampling strategy at most cases, which means 3DEPS may be the most stable strategy across all compared. This study not only helps to further improve the accuracy of point cloud deep learning networks for crop organ segmentation, but also gives clue to the alignment of down-sampling strategies and a specific network. BioMed Central 2023-11-11 /pmc/articles/PMC10640751/ /pubmed/37951912 http://dx.doi.org/10.1186/s13007-023-01099-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Li, Dawei
Wei, Yongchang
Zhu, Rongsheng
A comparative study on point cloud down-sampling strategies for deep learning-based crop organ segmentation
title A comparative study on point cloud down-sampling strategies for deep learning-based crop organ segmentation
title_full A comparative study on point cloud down-sampling strategies for deep learning-based crop organ segmentation
title_fullStr A comparative study on point cloud down-sampling strategies for deep learning-based crop organ segmentation
title_full_unstemmed A comparative study on point cloud down-sampling strategies for deep learning-based crop organ segmentation
title_short A comparative study on point cloud down-sampling strategies for deep learning-based crop organ segmentation
title_sort comparative study on point cloud down-sampling strategies for deep learning-based crop organ segmentation
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10640751/
https://www.ncbi.nlm.nih.gov/pubmed/37951912
http://dx.doi.org/10.1186/s13007-023-01099-7
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