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Complete genome sequence of Pediococcus acidilactici CACC 537 isolated from canine

Pedi coccus acidilactici CACC 537 was isolated from canine feces and reported to have probiotic properties. We aimed to characterize the potential probiotic properties of this strain by functional genomic analysis. Complete genome sequencing of P. acidilactici CACC 537 was performed using a PacBio R...

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Autores principales: Kim, Jung-Ae, Jang, Hyun-Jun, Kim, Dae-Hyuk, Son, Youn Kyoung, Kim, Yangseon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korean Society of Animal Sciences and Technology 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10640928/
https://www.ncbi.nlm.nih.gov/pubmed/37969339
http://dx.doi.org/10.5187/jast.2022.e102
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author Kim, Jung-Ae
Jang, Hyun-Jun
Kim, Dae-Hyuk
Son, Youn Kyoung
Kim, Yangseon
author_facet Kim, Jung-Ae
Jang, Hyun-Jun
Kim, Dae-Hyuk
Son, Youn Kyoung
Kim, Yangseon
author_sort Kim, Jung-Ae
collection PubMed
description Pedi coccus acidilactici CACC 537 was isolated from canine feces and reported to have probiotic properties. We aimed to characterize the potential probiotic properties of this strain by functional genomic analysis. Complete genome sequencing of P. acidilactici CACC 537 was performed using a PacBio RSII and Illumina platform, and contained one circular chromosome (2.0 Mb) with a 42% G + C content. The sequences were annotation revealed 1,897 protein-coding sequences, 15 rRNAs, and 56 tRNAs. It was determined that P. acidilactici CACC 537 genome carries genes known to be involved in the immune system, defense mechanisms, restriction-modification (R-M), and the CRISPR system. CACC 537 was shown to be beneficial in preventing pathogen infection during the fermentation process, help host immunity, and maintain intestinal health. These results provide for a comprehensive understanding of P. acidilactici and the development of industrial probiotic feed additives that can help improve host immunity and intestinal health.
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spelling pubmed-106409282023-11-15 Complete genome sequence of Pediococcus acidilactici CACC 537 isolated from canine Kim, Jung-Ae Jang, Hyun-Jun Kim, Dae-Hyuk Son, Youn Kyoung Kim, Yangseon J Anim Sci Technol Research Article Pedi coccus acidilactici CACC 537 was isolated from canine feces and reported to have probiotic properties. We aimed to characterize the potential probiotic properties of this strain by functional genomic analysis. Complete genome sequencing of P. acidilactici CACC 537 was performed using a PacBio RSII and Illumina platform, and contained one circular chromosome (2.0 Mb) with a 42% G + C content. The sequences were annotation revealed 1,897 protein-coding sequences, 15 rRNAs, and 56 tRNAs. It was determined that P. acidilactici CACC 537 genome carries genes known to be involved in the immune system, defense mechanisms, restriction-modification (R-M), and the CRISPR system. CACC 537 was shown to be beneficial in preventing pathogen infection during the fermentation process, help host immunity, and maintain intestinal health. These results provide for a comprehensive understanding of P. acidilactici and the development of industrial probiotic feed additives that can help improve host immunity and intestinal health. Korean Society of Animal Sciences and Technology 2023-09 2023-09-30 /pmc/articles/PMC10640928/ /pubmed/37969339 http://dx.doi.org/10.5187/jast.2022.e102 Text en © Copyright 2023 Korean Society of Animal Science and Technology https://creativecommons.org/licenses/by-nc/4.0/This is an Open-Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Kim, Jung-Ae
Jang, Hyun-Jun
Kim, Dae-Hyuk
Son, Youn Kyoung
Kim, Yangseon
Complete genome sequence of Pediococcus acidilactici CACC 537 isolated from canine
title Complete genome sequence of Pediococcus acidilactici CACC 537 isolated from canine
title_full Complete genome sequence of Pediococcus acidilactici CACC 537 isolated from canine
title_fullStr Complete genome sequence of Pediococcus acidilactici CACC 537 isolated from canine
title_full_unstemmed Complete genome sequence of Pediococcus acidilactici CACC 537 isolated from canine
title_short Complete genome sequence of Pediococcus acidilactici CACC 537 isolated from canine
title_sort complete genome sequence of pediococcus acidilactici cacc 537 isolated from canine
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10640928/
https://www.ncbi.nlm.nih.gov/pubmed/37969339
http://dx.doi.org/10.5187/jast.2022.e102
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