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Electronic structure and molecular properties of nitisinone and mesotrione in water
CONTEXT: Nitisinone is a medium-sized organic molecule that is used in treating hereditary tyrosinemia type 1 (HT-1). The structurally analogous mesotrione, however, is used as a pesticide/herbicide. What molecular properties are responsible for the similarity/dissimilarity of these molecules is inv...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10641058/ https://www.ncbi.nlm.nih.gov/pubmed/37953387 http://dx.doi.org/10.1007/s00894-023-05780-5 |
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author | Imrich, Richard Štofko, Juraj Boča, Roman Rajnák, Cyril |
author_facet | Imrich, Richard Štofko, Juraj Boča, Roman Rajnák, Cyril |
author_sort | Imrich, Richard |
collection | PubMed |
description | CONTEXT: Nitisinone is a medium-sized organic molecule that is used in treating hereditary tyrosinemia type 1 (HT-1). The structurally analogous mesotrione, however, is used as a pesticide/herbicide. What molecular properties are responsible for the similarity/dissimilarity of these molecules is investigated here. The solvent effect reduces the electron affinity to rather negative values and causes the negative electron affinity which manifests itself in a very high positive absolute reduction potential. METHODS: B3LYP method was utilized for a geometry optimization of nitisinone and mesotrione in their neural and ionized (L(0), L(+), L(−)) forms of 6 structures. The calculations were conducted in water as a solvent using conductor-like polarizable continuum model (CPCM), nitisinone also in vacuo. The complete vibrational analysis at the true energy minimum allows evaluating the thermodynamic functions with focus to the zero-point energy and overall entropic term. The change of the Gibbs energy on reductions and/or oxidation facilitates evaluating the absolute reduction and absolute oxidation potentials. Also, DLPNO-CCSD(T) method that involves the major part of the correlation energy has been applied to nitisinone and mesotrione and their molecular ions. |
format | Online Article Text |
id | pubmed-10641058 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-106410582023-11-14 Electronic structure and molecular properties of nitisinone and mesotrione in water Imrich, Richard Štofko, Juraj Boča, Roman Rajnák, Cyril J Mol Model Original Paper CONTEXT: Nitisinone is a medium-sized organic molecule that is used in treating hereditary tyrosinemia type 1 (HT-1). The structurally analogous mesotrione, however, is used as a pesticide/herbicide. What molecular properties are responsible for the similarity/dissimilarity of these molecules is investigated here. The solvent effect reduces the electron affinity to rather negative values and causes the negative electron affinity which manifests itself in a very high positive absolute reduction potential. METHODS: B3LYP method was utilized for a geometry optimization of nitisinone and mesotrione in their neural and ionized (L(0), L(+), L(−)) forms of 6 structures. The calculations were conducted in water as a solvent using conductor-like polarizable continuum model (CPCM), nitisinone also in vacuo. The complete vibrational analysis at the true energy minimum allows evaluating the thermodynamic functions with focus to the zero-point energy and overall entropic term. The change of the Gibbs energy on reductions and/or oxidation facilitates evaluating the absolute reduction and absolute oxidation potentials. Also, DLPNO-CCSD(T) method that involves the major part of the correlation energy has been applied to nitisinone and mesotrione and their molecular ions. Springer Berlin Heidelberg 2023-11-13 2023 /pmc/articles/PMC10641058/ /pubmed/37953387 http://dx.doi.org/10.1007/s00894-023-05780-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Paper Imrich, Richard Štofko, Juraj Boča, Roman Rajnák, Cyril Electronic structure and molecular properties of nitisinone and mesotrione in water |
title | Electronic structure and molecular properties of nitisinone and mesotrione in water |
title_full | Electronic structure and molecular properties of nitisinone and mesotrione in water |
title_fullStr | Electronic structure and molecular properties of nitisinone and mesotrione in water |
title_full_unstemmed | Electronic structure and molecular properties of nitisinone and mesotrione in water |
title_short | Electronic structure and molecular properties of nitisinone and mesotrione in water |
title_sort | electronic structure and molecular properties of nitisinone and mesotrione in water |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10641058/ https://www.ncbi.nlm.nih.gov/pubmed/37953387 http://dx.doi.org/10.1007/s00894-023-05780-5 |
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