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Electronic structure and molecular properties of nitisinone and mesotrione in water

CONTEXT: Nitisinone is a medium-sized organic molecule that is used in treating hereditary tyrosinemia type 1 (HT-1). The structurally analogous mesotrione, however, is used as a pesticide/herbicide. What molecular properties are responsible for the similarity/dissimilarity of these molecules is inv...

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Autores principales: Imrich, Richard, Štofko, Juraj, Boča, Roman, Rajnák, Cyril
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10641058/
https://www.ncbi.nlm.nih.gov/pubmed/37953387
http://dx.doi.org/10.1007/s00894-023-05780-5
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author Imrich, Richard
Štofko, Juraj
Boča, Roman
Rajnák, Cyril
author_facet Imrich, Richard
Štofko, Juraj
Boča, Roman
Rajnák, Cyril
author_sort Imrich, Richard
collection PubMed
description CONTEXT: Nitisinone is a medium-sized organic molecule that is used in treating hereditary tyrosinemia type 1 (HT-1). The structurally analogous mesotrione, however, is used as a pesticide/herbicide. What molecular properties are responsible for the similarity/dissimilarity of these molecules is investigated here. The solvent effect reduces the electron affinity to rather negative values and causes the negative electron affinity which manifests itself in a very high positive absolute reduction potential. METHODS: B3LYP method was utilized for a geometry optimization of nitisinone and mesotrione in their neural and ionized (L(0), L(+), L(−)) forms of 6 structures. The calculations were conducted in water as a solvent using conductor-like polarizable continuum model (CPCM), nitisinone also in vacuo. The complete vibrational analysis at the true energy minimum allows evaluating the thermodynamic functions with focus to the zero-point energy and overall entropic term. The change of the Gibbs energy on reductions and/or oxidation facilitates evaluating the absolute reduction and absolute oxidation potentials. Also, DLPNO-CCSD(T) method that involves the major part of the correlation energy has been applied to nitisinone and mesotrione and their molecular ions.
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spelling pubmed-106410582023-11-14 Electronic structure and molecular properties of nitisinone and mesotrione in water Imrich, Richard Štofko, Juraj Boča, Roman Rajnák, Cyril J Mol Model Original Paper CONTEXT: Nitisinone is a medium-sized organic molecule that is used in treating hereditary tyrosinemia type 1 (HT-1). The structurally analogous mesotrione, however, is used as a pesticide/herbicide. What molecular properties are responsible for the similarity/dissimilarity of these molecules is investigated here. The solvent effect reduces the electron affinity to rather negative values and causes the negative electron affinity which manifests itself in a very high positive absolute reduction potential. METHODS: B3LYP method was utilized for a geometry optimization of nitisinone and mesotrione in their neural and ionized (L(0), L(+), L(−)) forms of 6 structures. The calculations were conducted in water as a solvent using conductor-like polarizable continuum model (CPCM), nitisinone also in vacuo. The complete vibrational analysis at the true energy minimum allows evaluating the thermodynamic functions with focus to the zero-point energy and overall entropic term. The change of the Gibbs energy on reductions and/or oxidation facilitates evaluating the absolute reduction and absolute oxidation potentials. Also, DLPNO-CCSD(T) method that involves the major part of the correlation energy has been applied to nitisinone and mesotrione and their molecular ions. Springer Berlin Heidelberg 2023-11-13 2023 /pmc/articles/PMC10641058/ /pubmed/37953387 http://dx.doi.org/10.1007/s00894-023-05780-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Paper
Imrich, Richard
Štofko, Juraj
Boča, Roman
Rajnák, Cyril
Electronic structure and molecular properties of nitisinone and mesotrione in water
title Electronic structure and molecular properties of nitisinone and mesotrione in water
title_full Electronic structure and molecular properties of nitisinone and mesotrione in water
title_fullStr Electronic structure and molecular properties of nitisinone and mesotrione in water
title_full_unstemmed Electronic structure and molecular properties of nitisinone and mesotrione in water
title_short Electronic structure and molecular properties of nitisinone and mesotrione in water
title_sort electronic structure and molecular properties of nitisinone and mesotrione in water
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10641058/
https://www.ncbi.nlm.nih.gov/pubmed/37953387
http://dx.doi.org/10.1007/s00894-023-05780-5
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