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The dataset on the draft whole-genome sequences of two Pseudomonas aeruginosa strains isolated from urine samples of patients with urinary tract diseases

Pseudomonas aeruginosa is a widespread multidrug-resistant opportunistic human pathogen with an extremely high mortality rate that leads to urinary tract infection morbidities in particular. Variability and dynamics in genome features and ecological flexibility help these bacteria adapt to many envi...

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Autores principales: Valeeva, L.R., Pudova, D.S., Khabipova, N.N., Shigapova, L.H., Shagimardanova, E.I., Rogov, A.M., Tagirova, T.R., Gimadeev, Z.G., Sharipova, M.R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10641123/
https://www.ncbi.nlm.nih.gov/pubmed/37965601
http://dx.doi.org/10.1016/j.dib.2023.109704
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author Valeeva, L.R.
Pudova, D.S.
Khabipova, N.N.
Shigapova, L.H.
Shagimardanova, E.I.
Rogov, A.M.
Tagirova, T.R.
Gimadeev, Z.G.
Sharipova, M.R.
author_facet Valeeva, L.R.
Pudova, D.S.
Khabipova, N.N.
Shigapova, L.H.
Shagimardanova, E.I.
Rogov, A.M.
Tagirova, T.R.
Gimadeev, Z.G.
Sharipova, M.R.
author_sort Valeeva, L.R.
collection PubMed
description Pseudomonas aeruginosa is a widespread multidrug-resistant opportunistic human pathogen with an extremely high mortality rate that leads to urinary tract infection morbidities in particular. Variability and dynamics in genome features and ecological flexibility help these bacteria adapt to many environments and hosts and underlie their broad antibiotic resistance. Overall, studies aimed at obtaining a deeper understanding of the genome organization of UTI-associated P. aeruginosa strains are of high importance for sustainable health care worldwide. Herein, we report the draft assembly of entire genomes of two P. aeruginosa strains, PA18 and PA23, isolated from voided urine of patients with urinary tract diseases (hydronephrosis and urolithiasis, respectively) and determine the most important genetic features for pathogenesis and virulence. Whole-genome sequencing and annotation of genomes revealed high similarity between the two UTI strains along with differences in comparison with other uropathogenic P. aeruginosa and reference strains. The 6 981 635 bp and 6 948 153 bp draft genome sequences with GC contents of 65.9% and 65.8%, respectively, provide new insights into the virulence genetic factors and genes associated with antimicrobial resistance. The whole genome data of PA18 and PA23 have been deposited in the NCBI GenBank database (accession numbers JAQRBF000000000.1 and JAQRBG000000000.1, respectively).
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spelling pubmed-106411232023-11-14 The dataset on the draft whole-genome sequences of two Pseudomonas aeruginosa strains isolated from urine samples of patients with urinary tract diseases Valeeva, L.R. Pudova, D.S. Khabipova, N.N. Shigapova, L.H. Shagimardanova, E.I. Rogov, A.M. Tagirova, T.R. Gimadeev, Z.G. Sharipova, M.R. Data Brief Data Article Pseudomonas aeruginosa is a widespread multidrug-resistant opportunistic human pathogen with an extremely high mortality rate that leads to urinary tract infection morbidities in particular. Variability and dynamics in genome features and ecological flexibility help these bacteria adapt to many environments and hosts and underlie their broad antibiotic resistance. Overall, studies aimed at obtaining a deeper understanding of the genome organization of UTI-associated P. aeruginosa strains are of high importance for sustainable health care worldwide. Herein, we report the draft assembly of entire genomes of two P. aeruginosa strains, PA18 and PA23, isolated from voided urine of patients with urinary tract diseases (hydronephrosis and urolithiasis, respectively) and determine the most important genetic features for pathogenesis and virulence. Whole-genome sequencing and annotation of genomes revealed high similarity between the two UTI strains along with differences in comparison with other uropathogenic P. aeruginosa and reference strains. The 6 981 635 bp and 6 948 153 bp draft genome sequences with GC contents of 65.9% and 65.8%, respectively, provide new insights into the virulence genetic factors and genes associated with antimicrobial resistance. The whole genome data of PA18 and PA23 have been deposited in the NCBI GenBank database (accession numbers JAQRBF000000000.1 and JAQRBG000000000.1, respectively). Elsevier 2023-10-20 /pmc/articles/PMC10641123/ /pubmed/37965601 http://dx.doi.org/10.1016/j.dib.2023.109704 Text en © 2023 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Valeeva, L.R.
Pudova, D.S.
Khabipova, N.N.
Shigapova, L.H.
Shagimardanova, E.I.
Rogov, A.M.
Tagirova, T.R.
Gimadeev, Z.G.
Sharipova, M.R.
The dataset on the draft whole-genome sequences of two Pseudomonas aeruginosa strains isolated from urine samples of patients with urinary tract diseases
title The dataset on the draft whole-genome sequences of two Pseudomonas aeruginosa strains isolated from urine samples of patients with urinary tract diseases
title_full The dataset on the draft whole-genome sequences of two Pseudomonas aeruginosa strains isolated from urine samples of patients with urinary tract diseases
title_fullStr The dataset on the draft whole-genome sequences of two Pseudomonas aeruginosa strains isolated from urine samples of patients with urinary tract diseases
title_full_unstemmed The dataset on the draft whole-genome sequences of two Pseudomonas aeruginosa strains isolated from urine samples of patients with urinary tract diseases
title_short The dataset on the draft whole-genome sequences of two Pseudomonas aeruginosa strains isolated from urine samples of patients with urinary tract diseases
title_sort dataset on the draft whole-genome sequences of two pseudomonas aeruginosa strains isolated from urine samples of patients with urinary tract diseases
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10641123/
https://www.ncbi.nlm.nih.gov/pubmed/37965601
http://dx.doi.org/10.1016/j.dib.2023.109704
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