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Molecular Modeling of the Deamidation Reaction in Solution: A Theoretical–Computational Study

[Image: see text] In this work, a theoretical–computational method is applied to study the deamidation reaction, a critical post-translational modification in proteins, using a simple model molecule in solution. The method allows one to comprehensively address the environmental effect, thereby enabl...

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Autores principales: De Sciscio, Maria Laura, Nardi, Alessandro Nicola, Centola, Fabio, Rossi, Mara, Guarnera, Enrico, D’Abramo, Marco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10641835/
https://www.ncbi.nlm.nih.gov/pubmed/37903302
http://dx.doi.org/10.1021/acs.jpcb.3c04662
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author De Sciscio, Maria Laura
Nardi, Alessandro Nicola
Centola, Fabio
Rossi, Mara
Guarnera, Enrico
D’Abramo, Marco
author_facet De Sciscio, Maria Laura
Nardi, Alessandro Nicola
Centola, Fabio
Rossi, Mara
Guarnera, Enrico
D’Abramo, Marco
author_sort De Sciscio, Maria Laura
collection PubMed
description [Image: see text] In this work, a theoretical–computational method is applied to study the deamidation reaction, a critical post-translational modification in proteins, using a simple model molecule in solution. The method allows one to comprehensively address the environmental effect, thereby enabling one to accurately derive the kinetic rate constants for the three main steps of the deamidation process. The results presented, in rather good agreement with the available experimental data, underline the necessity for a rigorous treatment of environmental factors and a precise kinetic model to correctly assess the overall kinetics of the deamidation reaction.
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spelling pubmed-106418352023-11-15 Molecular Modeling of the Deamidation Reaction in Solution: A Theoretical–Computational Study De Sciscio, Maria Laura Nardi, Alessandro Nicola Centola, Fabio Rossi, Mara Guarnera, Enrico D’Abramo, Marco J Phys Chem B [Image: see text] In this work, a theoretical–computational method is applied to study the deamidation reaction, a critical post-translational modification in proteins, using a simple model molecule in solution. The method allows one to comprehensively address the environmental effect, thereby enabling one to accurately derive the kinetic rate constants for the three main steps of the deamidation process. The results presented, in rather good agreement with the available experimental data, underline the necessity for a rigorous treatment of environmental factors and a precise kinetic model to correctly assess the overall kinetics of the deamidation reaction. American Chemical Society 2023-10-30 /pmc/articles/PMC10641835/ /pubmed/37903302 http://dx.doi.org/10.1021/acs.jpcb.3c04662 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle De Sciscio, Maria Laura
Nardi, Alessandro Nicola
Centola, Fabio
Rossi, Mara
Guarnera, Enrico
D’Abramo, Marco
Molecular Modeling of the Deamidation Reaction in Solution: A Theoretical–Computational Study
title Molecular Modeling of the Deamidation Reaction in Solution: A Theoretical–Computational Study
title_full Molecular Modeling of the Deamidation Reaction in Solution: A Theoretical–Computational Study
title_fullStr Molecular Modeling of the Deamidation Reaction in Solution: A Theoretical–Computational Study
title_full_unstemmed Molecular Modeling of the Deamidation Reaction in Solution: A Theoretical–Computational Study
title_short Molecular Modeling of the Deamidation Reaction in Solution: A Theoretical–Computational Study
title_sort molecular modeling of the deamidation reaction in solution: a theoretical–computational study
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10641835/
https://www.ncbi.nlm.nih.gov/pubmed/37903302
http://dx.doi.org/10.1021/acs.jpcb.3c04662
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