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Molecular Modeling of the Deamidation Reaction in Solution: A Theoretical–Computational Study
[Image: see text] In this work, a theoretical–computational method is applied to study the deamidation reaction, a critical post-translational modification in proteins, using a simple model molecule in solution. The method allows one to comprehensively address the environmental effect, thereby enabl...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10641835/ https://www.ncbi.nlm.nih.gov/pubmed/37903302 http://dx.doi.org/10.1021/acs.jpcb.3c04662 |
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author | De Sciscio, Maria Laura Nardi, Alessandro Nicola Centola, Fabio Rossi, Mara Guarnera, Enrico D’Abramo, Marco |
author_facet | De Sciscio, Maria Laura Nardi, Alessandro Nicola Centola, Fabio Rossi, Mara Guarnera, Enrico D’Abramo, Marco |
author_sort | De Sciscio, Maria Laura |
collection | PubMed |
description | [Image: see text] In this work, a theoretical–computational method is applied to study the deamidation reaction, a critical post-translational modification in proteins, using a simple model molecule in solution. The method allows one to comprehensively address the environmental effect, thereby enabling one to accurately derive the kinetic rate constants for the three main steps of the deamidation process. The results presented, in rather good agreement with the available experimental data, underline the necessity for a rigorous treatment of environmental factors and a precise kinetic model to correctly assess the overall kinetics of the deamidation reaction. |
format | Online Article Text |
id | pubmed-10641835 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-106418352023-11-15 Molecular Modeling of the Deamidation Reaction in Solution: A Theoretical–Computational Study De Sciscio, Maria Laura Nardi, Alessandro Nicola Centola, Fabio Rossi, Mara Guarnera, Enrico D’Abramo, Marco J Phys Chem B [Image: see text] In this work, a theoretical–computational method is applied to study the deamidation reaction, a critical post-translational modification in proteins, using a simple model molecule in solution. The method allows one to comprehensively address the environmental effect, thereby enabling one to accurately derive the kinetic rate constants for the three main steps of the deamidation process. The results presented, in rather good agreement with the available experimental data, underline the necessity for a rigorous treatment of environmental factors and a precise kinetic model to correctly assess the overall kinetics of the deamidation reaction. American Chemical Society 2023-10-30 /pmc/articles/PMC10641835/ /pubmed/37903302 http://dx.doi.org/10.1021/acs.jpcb.3c04662 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | De Sciscio, Maria Laura Nardi, Alessandro Nicola Centola, Fabio Rossi, Mara Guarnera, Enrico D’Abramo, Marco Molecular Modeling of the Deamidation Reaction in Solution: A Theoretical–Computational Study |
title | Molecular Modeling
of the Deamidation Reaction in
Solution: A Theoretical–Computational Study |
title_full | Molecular Modeling
of the Deamidation Reaction in
Solution: A Theoretical–Computational Study |
title_fullStr | Molecular Modeling
of the Deamidation Reaction in
Solution: A Theoretical–Computational Study |
title_full_unstemmed | Molecular Modeling
of the Deamidation Reaction in
Solution: A Theoretical–Computational Study |
title_short | Molecular Modeling
of the Deamidation Reaction in
Solution: A Theoretical–Computational Study |
title_sort | molecular modeling
of the deamidation reaction in
solution: a theoretical–computational study |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10641835/ https://www.ncbi.nlm.nih.gov/pubmed/37903302 http://dx.doi.org/10.1021/acs.jpcb.3c04662 |
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