Cargando…

The first report on a new Tor species, Tor barakae Arunkumar & Basudha 2003, from Bangladesh using DNA barcoding technique

Mahseer are large-scale fish of the Cyprinidae family that inhabit South and Southeast Asian mountainous streams, rivers, and reservoirs. Tor tor and Tor putitora, two species of the Tor genus, were reportedly found in Bangladesh. This study aimed to confirm the species level of specimens collected...

Descripción completa

Detalles Bibliográficos
Autores principales: Haque, Md Amdadul, Rashid, Jonaira, Mia, Md Lipon, Rahman, Md Khaled, Ali, Md Azhar, Bhadra, Anuradha, Mahmud, Yahia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10643279/
https://www.ncbi.nlm.nih.gov/pubmed/38027658
http://dx.doi.org/10.1016/j.heliyon.2023.e21764
_version_ 1785134321632280576
author Haque, Md Amdadul
Rashid, Jonaira
Mia, Md Lipon
Rahman, Md Khaled
Ali, Md Azhar
Bhadra, Anuradha
Mahmud, Yahia
author_facet Haque, Md Amdadul
Rashid, Jonaira
Mia, Md Lipon
Rahman, Md Khaled
Ali, Md Azhar
Bhadra, Anuradha
Mahmud, Yahia
author_sort Haque, Md Amdadul
collection PubMed
description Mahseer are large-scale fish of the Cyprinidae family that inhabit South and Southeast Asian mountainous streams, rivers, and reservoirs. Tor tor and Tor putitora, two species of the Tor genus, were reportedly found in Bangladesh. This study aimed to confirm the species level of specimens collected from the Sangu River. The collected samples were identified using the DNA barcoding technique, followed by amplifying 645 bp of the cytochrome oxidase c subunit 1 gene (COI) using the FishF1/FishR1 universal primer. The sequence similarity was conducted using BOLD and NCBI databases which showed 99.85–100 % similarity to the reference genome. The genetic divergence between T. putitora vs. SRI, BT, and ST was found to be 0.0239, 0.0239, and 0.0238, respectively. The genetic divergence between T. tor vs. SRI, BT, and ST was 0.0272, 0.0272, and 0.0270, respectively. In the phylogenetic tree, two clusters were formed where collected specimens (SRI, BT, and ST) formed a subcluster with the reference genome (NC_056296.1 T. barakae) with 100 % bootstrap support. This study's findings revealed the presence of a new Tor species named Tor barakae in the Sangu River basin in Bangladesh.
format Online
Article
Text
id pubmed-10643279
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-106432792023-10-28 The first report on a new Tor species, Tor barakae Arunkumar & Basudha 2003, from Bangladesh using DNA barcoding technique Haque, Md Amdadul Rashid, Jonaira Mia, Md Lipon Rahman, Md Khaled Ali, Md Azhar Bhadra, Anuradha Mahmud, Yahia Heliyon Research Article Mahseer are large-scale fish of the Cyprinidae family that inhabit South and Southeast Asian mountainous streams, rivers, and reservoirs. Tor tor and Tor putitora, two species of the Tor genus, were reportedly found in Bangladesh. This study aimed to confirm the species level of specimens collected from the Sangu River. The collected samples were identified using the DNA barcoding technique, followed by amplifying 645 bp of the cytochrome oxidase c subunit 1 gene (COI) using the FishF1/FishR1 universal primer. The sequence similarity was conducted using BOLD and NCBI databases which showed 99.85–100 % similarity to the reference genome. The genetic divergence between T. putitora vs. SRI, BT, and ST was found to be 0.0239, 0.0239, and 0.0238, respectively. The genetic divergence between T. tor vs. SRI, BT, and ST was 0.0272, 0.0272, and 0.0270, respectively. In the phylogenetic tree, two clusters were formed where collected specimens (SRI, BT, and ST) formed a subcluster with the reference genome (NC_056296.1 T. barakae) with 100 % bootstrap support. This study's findings revealed the presence of a new Tor species named Tor barakae in the Sangu River basin in Bangladesh. Elsevier 2023-10-28 /pmc/articles/PMC10643279/ /pubmed/38027658 http://dx.doi.org/10.1016/j.heliyon.2023.e21764 Text en © 2023 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Research Article
Haque, Md Amdadul
Rashid, Jonaira
Mia, Md Lipon
Rahman, Md Khaled
Ali, Md Azhar
Bhadra, Anuradha
Mahmud, Yahia
The first report on a new Tor species, Tor barakae Arunkumar & Basudha 2003, from Bangladesh using DNA barcoding technique
title The first report on a new Tor species, Tor barakae Arunkumar & Basudha 2003, from Bangladesh using DNA barcoding technique
title_full The first report on a new Tor species, Tor barakae Arunkumar & Basudha 2003, from Bangladesh using DNA barcoding technique
title_fullStr The first report on a new Tor species, Tor barakae Arunkumar & Basudha 2003, from Bangladesh using DNA barcoding technique
title_full_unstemmed The first report on a new Tor species, Tor barakae Arunkumar & Basudha 2003, from Bangladesh using DNA barcoding technique
title_short The first report on a new Tor species, Tor barakae Arunkumar & Basudha 2003, from Bangladesh using DNA barcoding technique
title_sort first report on a new tor species, tor barakae arunkumar & basudha 2003, from bangladesh using dna barcoding technique
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10643279/
https://www.ncbi.nlm.nih.gov/pubmed/38027658
http://dx.doi.org/10.1016/j.heliyon.2023.e21764
work_keys_str_mv AT haquemdamdadul thefirstreportonanewtorspeciestorbarakaearunkumarbasudha2003frombangladeshusingdnabarcodingtechnique
AT rashidjonaira thefirstreportonanewtorspeciestorbarakaearunkumarbasudha2003frombangladeshusingdnabarcodingtechnique
AT miamdlipon thefirstreportonanewtorspeciestorbarakaearunkumarbasudha2003frombangladeshusingdnabarcodingtechnique
AT rahmanmdkhaled thefirstreportonanewtorspeciestorbarakaearunkumarbasudha2003frombangladeshusingdnabarcodingtechnique
AT alimdazhar thefirstreportonanewtorspeciestorbarakaearunkumarbasudha2003frombangladeshusingdnabarcodingtechnique
AT bhadraanuradha thefirstreportonanewtorspeciestorbarakaearunkumarbasudha2003frombangladeshusingdnabarcodingtechnique
AT mahmudyahia thefirstreportonanewtorspeciestorbarakaearunkumarbasudha2003frombangladeshusingdnabarcodingtechnique
AT haquemdamdadul firstreportonanewtorspeciestorbarakaearunkumarbasudha2003frombangladeshusingdnabarcodingtechnique
AT rashidjonaira firstreportonanewtorspeciestorbarakaearunkumarbasudha2003frombangladeshusingdnabarcodingtechnique
AT miamdlipon firstreportonanewtorspeciestorbarakaearunkumarbasudha2003frombangladeshusingdnabarcodingtechnique
AT rahmanmdkhaled firstreportonanewtorspeciestorbarakaearunkumarbasudha2003frombangladeshusingdnabarcodingtechnique
AT alimdazhar firstreportonanewtorspeciestorbarakaearunkumarbasudha2003frombangladeshusingdnabarcodingtechnique
AT bhadraanuradha firstreportonanewtorspeciestorbarakaearunkumarbasudha2003frombangladeshusingdnabarcodingtechnique
AT mahmudyahia firstreportonanewtorspeciestorbarakaearunkumarbasudha2003frombangladeshusingdnabarcodingtechnique