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OSC-CO(2): coattention and cosegmentation framework for plant state change with multiple features
Cosegmentation and coattention are extensions of traditional segmentation methods aimed at detecting a common object (or objects) in a group of images. Current cosegmentation and coattention methods are ineffective for objects, such as plants, that change their morphological state while being captur...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10644038/ https://www.ncbi.nlm.nih.gov/pubmed/38023863 http://dx.doi.org/10.3389/fpls.2023.1211409 |
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author | Quiñones, Rubi Samal, Ashok Das Choudhury, Sruti Muñoz-Arriola, Francisco |
author_facet | Quiñones, Rubi Samal, Ashok Das Choudhury, Sruti Muñoz-Arriola, Francisco |
author_sort | Quiñones, Rubi |
collection | PubMed |
description | Cosegmentation and coattention are extensions of traditional segmentation methods aimed at detecting a common object (or objects) in a group of images. Current cosegmentation and coattention methods are ineffective for objects, such as plants, that change their morphological state while being captured in different modalities and views. The Object State Change using Coattention-Cosegmentation (OSC-CO(2)) is an end-to-end unsupervised deep-learning framework that enhances traditional segmentation techniques, processing, analyzing, selecting, and combining suitable segmentation results that may contain most of our target object’s pixels, and then displaying a final segmented image. The framework leverages coattention-based convolutional neural networks (CNNs) and cosegmentation-based dense Conditional Random Fields (CRFs) to address segmentation accuracy in high-dimensional plant imagery with evolving plant objects. The efficacy of OSC-CO(2) is demonstrated using plant growth sequences imaged with infrared, visible, and fluorescence cameras in multiple views using a remote sensing, high-throughput phenotyping platform, and is evaluated using Jaccard index and precision measures. We also introduce CosegPP+, a dataset that is structured and can provide quantitative information on the efficacy of our framework. Results show that OSC-CO(2) out performed state-of-the art segmentation and cosegmentation methods by improving segementation accuracy by 3% to 45%. |
format | Online Article Text |
id | pubmed-10644038 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-106440382023-01-01 OSC-CO(2): coattention and cosegmentation framework for plant state change with multiple features Quiñones, Rubi Samal, Ashok Das Choudhury, Sruti Muñoz-Arriola, Francisco Front Plant Sci Plant Science Cosegmentation and coattention are extensions of traditional segmentation methods aimed at detecting a common object (or objects) in a group of images. Current cosegmentation and coattention methods are ineffective for objects, such as plants, that change their morphological state while being captured in different modalities and views. The Object State Change using Coattention-Cosegmentation (OSC-CO(2)) is an end-to-end unsupervised deep-learning framework that enhances traditional segmentation techniques, processing, analyzing, selecting, and combining suitable segmentation results that may contain most of our target object’s pixels, and then displaying a final segmented image. The framework leverages coattention-based convolutional neural networks (CNNs) and cosegmentation-based dense Conditional Random Fields (CRFs) to address segmentation accuracy in high-dimensional plant imagery with evolving plant objects. The efficacy of OSC-CO(2) is demonstrated using plant growth sequences imaged with infrared, visible, and fluorescence cameras in multiple views using a remote sensing, high-throughput phenotyping platform, and is evaluated using Jaccard index and precision measures. We also introduce CosegPP+, a dataset that is structured and can provide quantitative information on the efficacy of our framework. Results show that OSC-CO(2) out performed state-of-the art segmentation and cosegmentation methods by improving segementation accuracy by 3% to 45%. Frontiers Media S.A. 2023-10-31 /pmc/articles/PMC10644038/ /pubmed/38023863 http://dx.doi.org/10.3389/fpls.2023.1211409 Text en Copyright © 2023 Quiñones, Samal, Das Choudhury and Muñoz-Arriola https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Quiñones, Rubi Samal, Ashok Das Choudhury, Sruti Muñoz-Arriola, Francisco OSC-CO(2): coattention and cosegmentation framework for plant state change with multiple features |
title | OSC-CO(2): coattention and cosegmentation framework for plant state change with multiple features |
title_full | OSC-CO(2): coattention and cosegmentation framework for plant state change with multiple features |
title_fullStr | OSC-CO(2): coattention and cosegmentation framework for plant state change with multiple features |
title_full_unstemmed | OSC-CO(2): coattention and cosegmentation framework for plant state change with multiple features |
title_short | OSC-CO(2): coattention and cosegmentation framework for plant state change with multiple features |
title_sort | osc-co(2): coattention and cosegmentation framework for plant state change with multiple features |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10644038/ https://www.ncbi.nlm.nih.gov/pubmed/38023863 http://dx.doi.org/10.3389/fpls.2023.1211409 |
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