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Discovery of inhibitors of protein tyrosine phosphatase 1B contained in a natural products library from Mexican medicinal plants and fungi using a combination of enzymatic and in silico methods**
This work aimed to discover protein tyrosine phosphatase 1B (PTP1B) inhibitors from a small molecule library of natural products (NPs) derived from selected Mexican medicinal plants and fungi to find new hits for developing antidiabetic drugs. The products showing similar IC(50) values to ursolic ac...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10644722/ https://www.ncbi.nlm.nih.gov/pubmed/38027024 http://dx.doi.org/10.3389/fphar.2023.1281045 |
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author | Díaz-Rojas, Miriam González-Andrade, Martin Aguayo-Ortiz, Rodrigo Rodríguez-Sotres, Rogelio Pérez-Vásquez, Araceli Madariaga-Mazón, Abraham Mata, Rachel |
author_facet | Díaz-Rojas, Miriam González-Andrade, Martin Aguayo-Ortiz, Rodrigo Rodríguez-Sotres, Rogelio Pérez-Vásquez, Araceli Madariaga-Mazón, Abraham Mata, Rachel |
author_sort | Díaz-Rojas, Miriam |
collection | PubMed |
description | This work aimed to discover protein tyrosine phosphatase 1B (PTP1B) inhibitors from a small molecule library of natural products (NPs) derived from selected Mexican medicinal plants and fungi to find new hits for developing antidiabetic drugs. The products showing similar IC(50) values to ursolic acid (UA) (positive control, IC(50) = 26.5) were considered hits. These compounds were canophyllol (1), 5-O-(β-D-glucopyranosyl)-7-methoxy-3′,4′-dihydroxy-4-phenylcoumarin (2), 3,4-dimethoxy-2,5-phenanthrenediol (3), masticadienonic acid (4), 4′,5,6-trihydroxy-3′,7-dimethoxyflavone (5), E/Z vermelhotin (6), tajixanthone hydrate (7), quercetin-3-O-(6″-benzoyl)-β-D-galactoside (8), lichexanthone (9), melianodiol (10), and confusarin (11). According to the double-reciprocal plots, 1 was a non-competitive inhibitor, 3 a mixed-type, and 6 competitive. The chemical space analysis of the hits (IC(50) < 100 μM) and compounds possessing activity (IC(50) in the range of 100–1,000 μM) with the BIOFACQUIM library indicated that the active molecules are chemically diverse, covering most of the known Mexican NPs’ chemical space. Finally, a structure–activity similarity (SAS) map was built using the Tanimoto similarity index and PTP1B absolute inhibitory activity, which allows the identification of seven scaffold hops, namely, compounds 3, 5, 6, 7, 8, 9, and 11. Canophyllol (1), on the other hand, is a true analog of UA since it is an SAR continuous zone of the SAS map. |
format | Online Article Text |
id | pubmed-10644722 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-106447222023-10-31 Discovery of inhibitors of protein tyrosine phosphatase 1B contained in a natural products library from Mexican medicinal plants and fungi using a combination of enzymatic and in silico methods** Díaz-Rojas, Miriam González-Andrade, Martin Aguayo-Ortiz, Rodrigo Rodríguez-Sotres, Rogelio Pérez-Vásquez, Araceli Madariaga-Mazón, Abraham Mata, Rachel Front Pharmacol Pharmacology This work aimed to discover protein tyrosine phosphatase 1B (PTP1B) inhibitors from a small molecule library of natural products (NPs) derived from selected Mexican medicinal plants and fungi to find new hits for developing antidiabetic drugs. The products showing similar IC(50) values to ursolic acid (UA) (positive control, IC(50) = 26.5) were considered hits. These compounds were canophyllol (1), 5-O-(β-D-glucopyranosyl)-7-methoxy-3′,4′-dihydroxy-4-phenylcoumarin (2), 3,4-dimethoxy-2,5-phenanthrenediol (3), masticadienonic acid (4), 4′,5,6-trihydroxy-3′,7-dimethoxyflavone (5), E/Z vermelhotin (6), tajixanthone hydrate (7), quercetin-3-O-(6″-benzoyl)-β-D-galactoside (8), lichexanthone (9), melianodiol (10), and confusarin (11). According to the double-reciprocal plots, 1 was a non-competitive inhibitor, 3 a mixed-type, and 6 competitive. The chemical space analysis of the hits (IC(50) < 100 μM) and compounds possessing activity (IC(50) in the range of 100–1,000 μM) with the BIOFACQUIM library indicated that the active molecules are chemically diverse, covering most of the known Mexican NPs’ chemical space. Finally, a structure–activity similarity (SAS) map was built using the Tanimoto similarity index and PTP1B absolute inhibitory activity, which allows the identification of seven scaffold hops, namely, compounds 3, 5, 6, 7, 8, 9, and 11. Canophyllol (1), on the other hand, is a true analog of UA since it is an SAR continuous zone of the SAS map. Frontiers Media S.A. 2023-10-31 /pmc/articles/PMC10644722/ /pubmed/38027024 http://dx.doi.org/10.3389/fphar.2023.1281045 Text en Copyright © 2023 Díaz-Rojas, González-Andrade, Aguayo-Ortiz, Rodríguez-Sotres, Pérez-Vásquez, Madariaga-Mazón and Mata. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Pharmacology Díaz-Rojas, Miriam González-Andrade, Martin Aguayo-Ortiz, Rodrigo Rodríguez-Sotres, Rogelio Pérez-Vásquez, Araceli Madariaga-Mazón, Abraham Mata, Rachel Discovery of inhibitors of protein tyrosine phosphatase 1B contained in a natural products library from Mexican medicinal plants and fungi using a combination of enzymatic and in silico methods** |
title | Discovery of inhibitors of protein tyrosine phosphatase 1B contained in a natural products library from Mexican medicinal plants and fungi using a combination of enzymatic and in silico methods** |
title_full | Discovery of inhibitors of protein tyrosine phosphatase 1B contained in a natural products library from Mexican medicinal plants and fungi using a combination of enzymatic and in silico methods** |
title_fullStr | Discovery of inhibitors of protein tyrosine phosphatase 1B contained in a natural products library from Mexican medicinal plants and fungi using a combination of enzymatic and in silico methods** |
title_full_unstemmed | Discovery of inhibitors of protein tyrosine phosphatase 1B contained in a natural products library from Mexican medicinal plants and fungi using a combination of enzymatic and in silico methods** |
title_short | Discovery of inhibitors of protein tyrosine phosphatase 1B contained in a natural products library from Mexican medicinal plants and fungi using a combination of enzymatic and in silico methods** |
title_sort | discovery of inhibitors of protein tyrosine phosphatase 1b contained in a natural products library from mexican medicinal plants and fungi using a combination of enzymatic and in silico methods** |
topic | Pharmacology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10644722/ https://www.ncbi.nlm.nih.gov/pubmed/38027024 http://dx.doi.org/10.3389/fphar.2023.1281045 |
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