Cargando…

Modelling of surface reactions and diffusion mediated by bulk diffusion

We develop a continuum framework applicable to solid-state hydrogen storage, cell biology and other scenarios where the diffusion of a single constituent within a bulk region is coupled via adsorption/desorption to reactions and diffusion on the boundary of the region. We formulate content balances...

Descripción completa

Detalles Bibliográficos
Autores principales: Duda, Fernando P., Forte Neto, Francisco S., Fried, Eliot
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10645080/
https://www.ncbi.nlm.nih.gov/pubmed/37926211
http://dx.doi.org/10.1098/rsta.2022.0367
_version_ 1785147318602825728
author Duda, Fernando P.
Forte Neto, Francisco S.
Fried, Eliot
author_facet Duda, Fernando P.
Forte Neto, Francisco S.
Fried, Eliot
author_sort Duda, Fernando P.
collection PubMed
description We develop a continuum framework applicable to solid-state hydrogen storage, cell biology and other scenarios where the diffusion of a single constituent within a bulk region is coupled via adsorption/desorption to reactions and diffusion on the boundary of the region. We formulate content balances for all relevant constituents and develop thermodynamically consistent constitutive equations. The latter encompass two classes of kinetics for adsorption/desorption and chemical reactions—fast and Marcelin–De Donder, and the second class includes mass action kinetics as a special case. We apply the framework to derive a system consisting of the standard diffusion equation in bulk and FitzHugh–Nagumo type surface reaction–diffusion system of equations on the boundary. We also study the linear stability of a homogeneous steady state in a spherical region and establish sufficient conditions for the occurrence of instabilities driven by surface diffusion. These findings are verified through numerical simulations which reveal that instabilities driven by diffusion lead to the emergence of steady-state spatial patterns from random initial conditions and that bulk diffusion can suppress spatial patterns, in which case temporal oscillations can ensue. We include an extension of our framework that accounts for mechanochemical coupling when the bulk region is occupied by a deformable solid. This article is part of the theme issue ‘Foundational issues, analysis and geometry in continuum mechanics’.
format Online
Article
Text
id pubmed-10645080
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher The Royal Society
record_format MEDLINE/PubMed
spelling pubmed-106450802023-11-15 Modelling of surface reactions and diffusion mediated by bulk diffusion Duda, Fernando P. Forte Neto, Francisco S. Fried, Eliot Philos Trans A Math Phys Eng Sci Articles We develop a continuum framework applicable to solid-state hydrogen storage, cell biology and other scenarios where the diffusion of a single constituent within a bulk region is coupled via adsorption/desorption to reactions and diffusion on the boundary of the region. We formulate content balances for all relevant constituents and develop thermodynamically consistent constitutive equations. The latter encompass two classes of kinetics for adsorption/desorption and chemical reactions—fast and Marcelin–De Donder, and the second class includes mass action kinetics as a special case. We apply the framework to derive a system consisting of the standard diffusion equation in bulk and FitzHugh–Nagumo type surface reaction–diffusion system of equations on the boundary. We also study the linear stability of a homogeneous steady state in a spherical region and establish sufficient conditions for the occurrence of instabilities driven by surface diffusion. These findings are verified through numerical simulations which reveal that instabilities driven by diffusion lead to the emergence of steady-state spatial patterns from random initial conditions and that bulk diffusion can suppress spatial patterns, in which case temporal oscillations can ensue. We include an extension of our framework that accounts for mechanochemical coupling when the bulk region is occupied by a deformable solid. This article is part of the theme issue ‘Foundational issues, analysis and geometry in continuum mechanics’. The Royal Society 2023-12-25 2023-11-06 /pmc/articles/PMC10645080/ /pubmed/37926211 http://dx.doi.org/10.1098/rsta.2022.0367 Text en © 2023 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited.
spellingShingle Articles
Duda, Fernando P.
Forte Neto, Francisco S.
Fried, Eliot
Modelling of surface reactions and diffusion mediated by bulk diffusion
title Modelling of surface reactions and diffusion mediated by bulk diffusion
title_full Modelling of surface reactions and diffusion mediated by bulk diffusion
title_fullStr Modelling of surface reactions and diffusion mediated by bulk diffusion
title_full_unstemmed Modelling of surface reactions and diffusion mediated by bulk diffusion
title_short Modelling of surface reactions and diffusion mediated by bulk diffusion
title_sort modelling of surface reactions and diffusion mediated by bulk diffusion
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10645080/
https://www.ncbi.nlm.nih.gov/pubmed/37926211
http://dx.doi.org/10.1098/rsta.2022.0367
work_keys_str_mv AT dudafernandop modellingofsurfacereactionsanddiffusionmediatedbybulkdiffusion
AT fortenetofranciscos modellingofsurfacereactionsanddiffusionmediatedbybulkdiffusion
AT friedeliot modellingofsurfacereactionsanddiffusionmediatedbybulkdiffusion