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Processing DNA Storage through Programmable Assembly in a Droplet‐Based Fluidics System

DNA can be used to store digital data, and synthetic short‐sequence DNA pools are developed to store high quantities of digital data. However, synthetic DNA data cannot be actively processed in DNA pools. An active DNA data editing process is developed using splint ligation in a droplet‐controlled f...

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Autores principales: Yu, Minsang, Lim, Doyeon, Kim, Jungwoo, Song, Youngjun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10646262/
https://www.ncbi.nlm.nih.gov/pubmed/37755129
http://dx.doi.org/10.1002/advs.202303197
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author Yu, Minsang
Lim, Doyeon
Kim, Jungwoo
Song, Youngjun
author_facet Yu, Minsang
Lim, Doyeon
Kim, Jungwoo
Song, Youngjun
author_sort Yu, Minsang
collection PubMed
description DNA can be used to store digital data, and synthetic short‐sequence DNA pools are developed to store high quantities of digital data. However, synthetic DNA data cannot be actively processed in DNA pools. An active DNA data editing process is developed using splint ligation in a droplet‐controlled fluidics (DCF) system. DNA fragments of discrete sizes (100–500 bps) are synthesized for droplet assembly, and programmed sequence information exchange occurred. The encoded DNA sequences are processed in series and parallel to synthesize the determined DNA pools, enabling random access using polymerase chain reaction amplification. The sequencing results of the assembled DNA data pools can be orderly aligned for decoding and have high fidelity through address primer scanning. Furthermore, eight 90 bps DNA pools with pixel information (png: 0.27–0.28 kB), encoded by codons, are synthesized to create eight 270 bps DNA pools with an animation movie chip file (mp4: 12 kB) in the DCF system.
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spelling pubmed-106462622023-09-26 Processing DNA Storage through Programmable Assembly in a Droplet‐Based Fluidics System Yu, Minsang Lim, Doyeon Kim, Jungwoo Song, Youngjun Adv Sci (Weinh) Research Articles DNA can be used to store digital data, and synthetic short‐sequence DNA pools are developed to store high quantities of digital data. However, synthetic DNA data cannot be actively processed in DNA pools. An active DNA data editing process is developed using splint ligation in a droplet‐controlled fluidics (DCF) system. DNA fragments of discrete sizes (100–500 bps) are synthesized for droplet assembly, and programmed sequence information exchange occurred. The encoded DNA sequences are processed in series and parallel to synthesize the determined DNA pools, enabling random access using polymerase chain reaction amplification. The sequencing results of the assembled DNA data pools can be orderly aligned for decoding and have high fidelity through address primer scanning. Furthermore, eight 90 bps DNA pools with pixel information (png: 0.27–0.28 kB), encoded by codons, are synthesized to create eight 270 bps DNA pools with an animation movie chip file (mp4: 12 kB) in the DCF system. John Wiley and Sons Inc. 2023-09-26 /pmc/articles/PMC10646262/ /pubmed/37755129 http://dx.doi.org/10.1002/advs.202303197 Text en © 2023 The Authors. Advanced Science published by Wiley‐VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Yu, Minsang
Lim, Doyeon
Kim, Jungwoo
Song, Youngjun
Processing DNA Storage through Programmable Assembly in a Droplet‐Based Fluidics System
title Processing DNA Storage through Programmable Assembly in a Droplet‐Based Fluidics System
title_full Processing DNA Storage through Programmable Assembly in a Droplet‐Based Fluidics System
title_fullStr Processing DNA Storage through Programmable Assembly in a Droplet‐Based Fluidics System
title_full_unstemmed Processing DNA Storage through Programmable Assembly in a Droplet‐Based Fluidics System
title_short Processing DNA Storage through Programmable Assembly in a Droplet‐Based Fluidics System
title_sort processing dna storage through programmable assembly in a droplet‐based fluidics system
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10646262/
https://www.ncbi.nlm.nih.gov/pubmed/37755129
http://dx.doi.org/10.1002/advs.202303197
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