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Euler characteristic curves and profiles: a stable shape invariant for big data problems

Tools of topological data analysis provide stable summaries encapsulating the shape of the considered data. Persistent homology, the most standard and well-studied data summary, suffers a number of limitations; its computations are hard to distribute, and it is hard to generalize to multifiltrations...

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Detalles Bibliográficos
Autores principales: Dłotko, Paweł, Gurnari, Davide
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10646871/
https://www.ncbi.nlm.nih.gov/pubmed/37966428
http://dx.doi.org/10.1093/gigascience/giad094
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author Dłotko, Paweł
Gurnari, Davide
author_facet Dłotko, Paweł
Gurnari, Davide
author_sort Dłotko, Paweł
collection PubMed
description Tools of topological data analysis provide stable summaries encapsulating the shape of the considered data. Persistent homology, the most standard and well-studied data summary, suffers a number of limitations; its computations are hard to distribute, and it is hard to generalize to multifiltrations and is computationally prohibitive for big datasets. In this article, we study the concept of Euler characteristics curves for 1-parameter filtrations and Euler characteristic profiles for multiparameter filtrations. While being a weaker invariant in one dimension, we show that Euler characteristic–based approaches do not possess some handicaps of persistent homology; we show efficient algorithms to compute them in a distributed way, their generalization to multifiltrations, and practical applicability for big data problems. In addition, we show that the Euler curves and profiles enjoy a certain type of stability, which makes them robust tools for data analysis. Lastly, to show their practical applicability, multiple use cases are considered.
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spelling pubmed-106468712023-11-15 Euler characteristic curves and profiles: a stable shape invariant for big data problems Dłotko, Paweł Gurnari, Davide Gigascience Research Tools of topological data analysis provide stable summaries encapsulating the shape of the considered data. Persistent homology, the most standard and well-studied data summary, suffers a number of limitations; its computations are hard to distribute, and it is hard to generalize to multifiltrations and is computationally prohibitive for big datasets. In this article, we study the concept of Euler characteristics curves for 1-parameter filtrations and Euler characteristic profiles for multiparameter filtrations. While being a weaker invariant in one dimension, we show that Euler characteristic–based approaches do not possess some handicaps of persistent homology; we show efficient algorithms to compute them in a distributed way, their generalization to multifiltrations, and practical applicability for big data problems. In addition, we show that the Euler curves and profiles enjoy a certain type of stability, which makes them robust tools for data analysis. Lastly, to show their practical applicability, multiple use cases are considered. Oxford University Press 2023-11-15 /pmc/articles/PMC10646871/ /pubmed/37966428 http://dx.doi.org/10.1093/gigascience/giad094 Text en © The Author(s) 2023. Published by Oxford University Press GigaScience. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research
Dłotko, Paweł
Gurnari, Davide
Euler characteristic curves and profiles: a stable shape invariant for big data problems
title Euler characteristic curves and profiles: a stable shape invariant for big data problems
title_full Euler characteristic curves and profiles: a stable shape invariant for big data problems
title_fullStr Euler characteristic curves and profiles: a stable shape invariant for big data problems
title_full_unstemmed Euler characteristic curves and profiles: a stable shape invariant for big data problems
title_short Euler characteristic curves and profiles: a stable shape invariant for big data problems
title_sort euler characteristic curves and profiles: a stable shape invariant for big data problems
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10646871/
https://www.ncbi.nlm.nih.gov/pubmed/37966428
http://dx.doi.org/10.1093/gigascience/giad094
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