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Force-field-enhanced neural network interactions: from local equivariant embedding to atom-in-molecule properties and long-range effects
We introduce FENNIX (Force-Field-Enhanced Neural Network InteraXions), a hybrid approach between machine-learning and force-fields. We leverage state-of-the-art equivariant neural networks to predict local energy contributions and multiple atom-in-molecule properties that are then used as geometry-d...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10646944/ https://www.ncbi.nlm.nih.gov/pubmed/38020379 http://dx.doi.org/10.1039/d3sc02581k |
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author | Plé, Thomas Lagardère, Louis Piquemal, Jean-Philip |
author_facet | Plé, Thomas Lagardère, Louis Piquemal, Jean-Philip |
author_sort | Plé, Thomas |
collection | PubMed |
description | We introduce FENNIX (Force-Field-Enhanced Neural Network InteraXions), a hybrid approach between machine-learning and force-fields. We leverage state-of-the-art equivariant neural networks to predict local energy contributions and multiple atom-in-molecule properties that are then used as geometry-dependent parameters for physically-motivated energy terms which account for long-range electrostatics and dispersion. Using high-accuracy ab initio data (small organic molecules/dimers), we trained a first version of the model. Exhibiting accurate gas-phase energy predictions, FENNIX is transferable to the condensed phase. It is able to produce stable Molecular Dynamics simulations, including nuclear quantum effects, for water predicting accurate liquid properties. The extrapolating power of the hybrid physically-driven machine learning FENNIX approach is exemplified by computing: (i) the solvated alanine dipeptide free energy landscape; (ii) the reactive dissociation of small molecules. |
format | Online Article Text |
id | pubmed-10646944 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-106469442023-10-03 Force-field-enhanced neural network interactions: from local equivariant embedding to atom-in-molecule properties and long-range effects Plé, Thomas Lagardère, Louis Piquemal, Jean-Philip Chem Sci Chemistry We introduce FENNIX (Force-Field-Enhanced Neural Network InteraXions), a hybrid approach between machine-learning and force-fields. We leverage state-of-the-art equivariant neural networks to predict local energy contributions and multiple atom-in-molecule properties that are then used as geometry-dependent parameters for physically-motivated energy terms which account for long-range electrostatics and dispersion. Using high-accuracy ab initio data (small organic molecules/dimers), we trained a first version of the model. Exhibiting accurate gas-phase energy predictions, FENNIX is transferable to the condensed phase. It is able to produce stable Molecular Dynamics simulations, including nuclear quantum effects, for water predicting accurate liquid properties. The extrapolating power of the hybrid physically-driven machine learning FENNIX approach is exemplified by computing: (i) the solvated alanine dipeptide free energy landscape; (ii) the reactive dissociation of small molecules. The Royal Society of Chemistry 2023-10-03 /pmc/articles/PMC10646944/ /pubmed/38020379 http://dx.doi.org/10.1039/d3sc02581k Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/ |
spellingShingle | Chemistry Plé, Thomas Lagardère, Louis Piquemal, Jean-Philip Force-field-enhanced neural network interactions: from local equivariant embedding to atom-in-molecule properties and long-range effects |
title | Force-field-enhanced neural network interactions: from local equivariant embedding to atom-in-molecule properties and long-range effects |
title_full | Force-field-enhanced neural network interactions: from local equivariant embedding to atom-in-molecule properties and long-range effects |
title_fullStr | Force-field-enhanced neural network interactions: from local equivariant embedding to atom-in-molecule properties and long-range effects |
title_full_unstemmed | Force-field-enhanced neural network interactions: from local equivariant embedding to atom-in-molecule properties and long-range effects |
title_short | Force-field-enhanced neural network interactions: from local equivariant embedding to atom-in-molecule properties and long-range effects |
title_sort | force-field-enhanced neural network interactions: from local equivariant embedding to atom-in-molecule properties and long-range effects |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10646944/ https://www.ncbi.nlm.nih.gov/pubmed/38020379 http://dx.doi.org/10.1039/d3sc02581k |
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