Cargando…

A research on the improved rotational robustness for thoracic organ delineation by using joint learning of segmenting spatially‐correlated organs: A U‐net based comparison

PURPOSE: To study the improved rotational robustness by using joint learning of spatially‐correlated organ segmentation (SCOS) for thoracic organ delineation. The network structure is not our point. METHODS: The SCOS was implemented in a U‐net‐like model (abbr. SCOS‐net) and evaluated on unseen rota...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Jie, Yang, Yiwei, Fang, Min, Xu, Yujin, Ji, Yongling, Chen, Ming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10647980/
https://www.ncbi.nlm.nih.gov/pubmed/37469242
http://dx.doi.org/10.1002/acm2.14096
_version_ 1785135231862308864
author Zhang, Jie
Yang, Yiwei
Fang, Min
Xu, Yujin
Ji, Yongling
Chen, Ming
author_facet Zhang, Jie
Yang, Yiwei
Fang, Min
Xu, Yujin
Ji, Yongling
Chen, Ming
author_sort Zhang, Jie
collection PubMed
description PURPOSE: To study the improved rotational robustness by using joint learning of spatially‐correlated organ segmentation (SCOS) for thoracic organ delineation. The network structure is not our point. METHODS: The SCOS was implemented in a U‐net‐like model (abbr. SCOS‐net) and evaluated on unseen rotated test sets. Two hundred sixty‐seven patients with thoracic tumors (232 without rotation and 35 with rotation) were enrolled. The training and validation images came from 61 randomly chosen unrotated patients. The test data included two sets. One consisted of 3000 slices from the rest 171 unrotated patients. They were rotated by us by –30°∼30°. One was the images from the 35 rotated patients. The lung, heart, and spinal cord were delineated by experienced radiation oncologists and regarded as ground truth. The SCOS‐net was compared with its single‐task learning counterparts, two published multiple learning task settings, and rotation augmentation. Dice, 3 distance metrics (maximum and 95th percentile of Hausdorff distances and average surface distance (ASD)) and the number of cases where ASD = infinity were adopted. We analyzed the results using visualization techniques. RESULTS: In terms of no augmentation, the SCOS‐net achieves the best lung and spinal cord segmentations and comparable heart delineation. With augmentation, SCOS performs better in some cases. CONCLUSION: The proposed SCOS can improve rotational robustness, and is promising in clinical applications for its low network capacity and computational cost.
format Online
Article
Text
id pubmed-10647980
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-106479802023-07-19 A research on the improved rotational robustness for thoracic organ delineation by using joint learning of segmenting spatially‐correlated organs: A U‐net based comparison Zhang, Jie Yang, Yiwei Fang, Min Xu, Yujin Ji, Yongling Chen, Ming J Appl Clin Med Phys Radiation Oncology Physics PURPOSE: To study the improved rotational robustness by using joint learning of spatially‐correlated organ segmentation (SCOS) for thoracic organ delineation. The network structure is not our point. METHODS: The SCOS was implemented in a U‐net‐like model (abbr. SCOS‐net) and evaluated on unseen rotated test sets. Two hundred sixty‐seven patients with thoracic tumors (232 without rotation and 35 with rotation) were enrolled. The training and validation images came from 61 randomly chosen unrotated patients. The test data included two sets. One consisted of 3000 slices from the rest 171 unrotated patients. They were rotated by us by –30°∼30°. One was the images from the 35 rotated patients. The lung, heart, and spinal cord were delineated by experienced radiation oncologists and regarded as ground truth. The SCOS‐net was compared with its single‐task learning counterparts, two published multiple learning task settings, and rotation augmentation. Dice, 3 distance metrics (maximum and 95th percentile of Hausdorff distances and average surface distance (ASD)) and the number of cases where ASD = infinity were adopted. We analyzed the results using visualization techniques. RESULTS: In terms of no augmentation, the SCOS‐net achieves the best lung and spinal cord segmentations and comparable heart delineation. With augmentation, SCOS performs better in some cases. CONCLUSION: The proposed SCOS can improve rotational robustness, and is promising in clinical applications for its low network capacity and computational cost. John Wiley and Sons Inc. 2023-07-19 /pmc/articles/PMC10647980/ /pubmed/37469242 http://dx.doi.org/10.1002/acm2.14096 Text en © 2023 The Authors. Journal of Applied Clinical Medical Physics published by Wiley Periodicals, LLC on behalf of The American Association of Physicists in Medicine. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Radiation Oncology Physics
Zhang, Jie
Yang, Yiwei
Fang, Min
Xu, Yujin
Ji, Yongling
Chen, Ming
A research on the improved rotational robustness for thoracic organ delineation by using joint learning of segmenting spatially‐correlated organs: A U‐net based comparison
title A research on the improved rotational robustness for thoracic organ delineation by using joint learning of segmenting spatially‐correlated organs: A U‐net based comparison
title_full A research on the improved rotational robustness for thoracic organ delineation by using joint learning of segmenting spatially‐correlated organs: A U‐net based comparison
title_fullStr A research on the improved rotational robustness for thoracic organ delineation by using joint learning of segmenting spatially‐correlated organs: A U‐net based comparison
title_full_unstemmed A research on the improved rotational robustness for thoracic organ delineation by using joint learning of segmenting spatially‐correlated organs: A U‐net based comparison
title_short A research on the improved rotational robustness for thoracic organ delineation by using joint learning of segmenting spatially‐correlated organs: A U‐net based comparison
title_sort research on the improved rotational robustness for thoracic organ delineation by using joint learning of segmenting spatially‐correlated organs: a u‐net based comparison
topic Radiation Oncology Physics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10647980/
https://www.ncbi.nlm.nih.gov/pubmed/37469242
http://dx.doi.org/10.1002/acm2.14096
work_keys_str_mv AT zhangjie aresearchontheimprovedrotationalrobustnessforthoracicorgandelineationbyusingjointlearningofsegmentingspatiallycorrelatedorgansaunetbasedcomparison
AT yangyiwei aresearchontheimprovedrotationalrobustnessforthoracicorgandelineationbyusingjointlearningofsegmentingspatiallycorrelatedorgansaunetbasedcomparison
AT fangmin aresearchontheimprovedrotationalrobustnessforthoracicorgandelineationbyusingjointlearningofsegmentingspatiallycorrelatedorgansaunetbasedcomparison
AT xuyujin aresearchontheimprovedrotationalrobustnessforthoracicorgandelineationbyusingjointlearningofsegmentingspatiallycorrelatedorgansaunetbasedcomparison
AT jiyongling aresearchontheimprovedrotationalrobustnessforthoracicorgandelineationbyusingjointlearningofsegmentingspatiallycorrelatedorgansaunetbasedcomparison
AT chenming aresearchontheimprovedrotationalrobustnessforthoracicorgandelineationbyusingjointlearningofsegmentingspatiallycorrelatedorgansaunetbasedcomparison
AT zhangjie researchontheimprovedrotationalrobustnessforthoracicorgandelineationbyusingjointlearningofsegmentingspatiallycorrelatedorgansaunetbasedcomparison
AT yangyiwei researchontheimprovedrotationalrobustnessforthoracicorgandelineationbyusingjointlearningofsegmentingspatiallycorrelatedorgansaunetbasedcomparison
AT fangmin researchontheimprovedrotationalrobustnessforthoracicorgandelineationbyusingjointlearningofsegmentingspatiallycorrelatedorgansaunetbasedcomparison
AT xuyujin researchontheimprovedrotationalrobustnessforthoracicorgandelineationbyusingjointlearningofsegmentingspatiallycorrelatedorgansaunetbasedcomparison
AT jiyongling researchontheimprovedrotationalrobustnessforthoracicorgandelineationbyusingjointlearningofsegmentingspatiallycorrelatedorgansaunetbasedcomparison
AT chenming researchontheimprovedrotationalrobustnessforthoracicorgandelineationbyusingjointlearningofsegmentingspatiallycorrelatedorgansaunetbasedcomparison