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Multi-Layer Preprocessing and U-Net with Residual Attention Block for Retinal Blood Vessel Segmentation

Retinal blood vessel segmentation is a valuable tool for clinicians to diagnose conditions such as atherosclerosis, glaucoma, and age-related macular degeneration. This paper presents a new framework for segmenting blood vessels in retinal images. The framework has two stages: a multi-layer preproce...

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Autores principales: Alsayat, Ahmed, Elmezain, Mahmoud, Alanazi, Saad, Alruily, Meshrif, Mostafa, Ayman Mohamed, Said, Wael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10648654/
https://www.ncbi.nlm.nih.gov/pubmed/37958260
http://dx.doi.org/10.3390/diagnostics13213364
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author Alsayat, Ahmed
Elmezain, Mahmoud
Alanazi, Saad
Alruily, Meshrif
Mostafa, Ayman Mohamed
Said, Wael
author_facet Alsayat, Ahmed
Elmezain, Mahmoud
Alanazi, Saad
Alruily, Meshrif
Mostafa, Ayman Mohamed
Said, Wael
author_sort Alsayat, Ahmed
collection PubMed
description Retinal blood vessel segmentation is a valuable tool for clinicians to diagnose conditions such as atherosclerosis, glaucoma, and age-related macular degeneration. This paper presents a new framework for segmenting blood vessels in retinal images. The framework has two stages: a multi-layer preprocessing stage and a subsequent segmentation stage employing a U-Net with a multi-residual attention block. The multi-layer preprocessing stage has three steps. The first step is noise reduction, employing a U-shaped convolutional neural network with matrix factorization (CNN with MF) and detailed U-shaped U-Net (D_U-Net) to minimize image noise, culminating in the selection of the most suitable image based on the PSNR and SSIM values. The second step is dynamic data imputation, utilizing multiple models for the purpose of filling in missing data. The third step is data augmentation through the utilization of a latent diffusion model (LDM) to expand the training dataset size. The second stage of the framework is segmentation, where the U-Nets with a multi-residual attention block are used to segment the retinal images after they have been preprocessed and noise has been removed. The experiments show that the framework is effective at segmenting retinal blood vessels. It achieved Dice scores of 95.32, accuracy of 93.56, precision of 95.68, and recall of 95.45. It also achieved efficient results in removing noise using CNN with matrix factorization (MF) and D-U-NET according to values of PSNR and SSIM for (0.1, 0.25, 0.5, and 0.75) levels of noise. The LDM achieved an inception score of 13.6 and an FID of 46.2 in the augmentation step.
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spelling pubmed-106486542023-11-01 Multi-Layer Preprocessing and U-Net with Residual Attention Block for Retinal Blood Vessel Segmentation Alsayat, Ahmed Elmezain, Mahmoud Alanazi, Saad Alruily, Meshrif Mostafa, Ayman Mohamed Said, Wael Diagnostics (Basel) Article Retinal blood vessel segmentation is a valuable tool for clinicians to diagnose conditions such as atherosclerosis, glaucoma, and age-related macular degeneration. This paper presents a new framework for segmenting blood vessels in retinal images. The framework has two stages: a multi-layer preprocessing stage and a subsequent segmentation stage employing a U-Net with a multi-residual attention block. The multi-layer preprocessing stage has three steps. The first step is noise reduction, employing a U-shaped convolutional neural network with matrix factorization (CNN with MF) and detailed U-shaped U-Net (D_U-Net) to minimize image noise, culminating in the selection of the most suitable image based on the PSNR and SSIM values. The second step is dynamic data imputation, utilizing multiple models for the purpose of filling in missing data. The third step is data augmentation through the utilization of a latent diffusion model (LDM) to expand the training dataset size. The second stage of the framework is segmentation, where the U-Nets with a multi-residual attention block are used to segment the retinal images after they have been preprocessed and noise has been removed. The experiments show that the framework is effective at segmenting retinal blood vessels. It achieved Dice scores of 95.32, accuracy of 93.56, precision of 95.68, and recall of 95.45. It also achieved efficient results in removing noise using CNN with matrix factorization (MF) and D-U-NET according to values of PSNR and SSIM for (0.1, 0.25, 0.5, and 0.75) levels of noise. The LDM achieved an inception score of 13.6 and an FID of 46.2 in the augmentation step. MDPI 2023-11-01 /pmc/articles/PMC10648654/ /pubmed/37958260 http://dx.doi.org/10.3390/diagnostics13213364 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Alsayat, Ahmed
Elmezain, Mahmoud
Alanazi, Saad
Alruily, Meshrif
Mostafa, Ayman Mohamed
Said, Wael
Multi-Layer Preprocessing and U-Net with Residual Attention Block for Retinal Blood Vessel Segmentation
title Multi-Layer Preprocessing and U-Net with Residual Attention Block for Retinal Blood Vessel Segmentation
title_full Multi-Layer Preprocessing and U-Net with Residual Attention Block for Retinal Blood Vessel Segmentation
title_fullStr Multi-Layer Preprocessing and U-Net with Residual Attention Block for Retinal Blood Vessel Segmentation
title_full_unstemmed Multi-Layer Preprocessing and U-Net with Residual Attention Block for Retinal Blood Vessel Segmentation
title_short Multi-Layer Preprocessing and U-Net with Residual Attention Block for Retinal Blood Vessel Segmentation
title_sort multi-layer preprocessing and u-net with residual attention block for retinal blood vessel segmentation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10648654/
https://www.ncbi.nlm.nih.gov/pubmed/37958260
http://dx.doi.org/10.3390/diagnostics13213364
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