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A Deep Reinforcement Learning Approach to Droplet Routing for Erroneous Digital Microfluidic Biochips †

Digital microfluidic biochips (DMFBs), which are used in various fields like DNA analysis, clinical diagnosis, and PCR testing, have made biochemical experiments more compact, efficient, and user-friendly than the previous methods. However, their reliability is often compromised by their inability t...

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Detalles Bibliográficos
Autores principales: Kawakami, Tomohisa, Shiro, Chiharu, Nishikawa, Hiroki, Kong, Xiangbo, Tomiyama, Hiroyuki, Yamashita, Shigeru
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10649759/
https://www.ncbi.nlm.nih.gov/pubmed/37960623
http://dx.doi.org/10.3390/s23218924
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author Kawakami, Tomohisa
Shiro, Chiharu
Nishikawa, Hiroki
Kong, Xiangbo
Tomiyama, Hiroyuki
Yamashita, Shigeru
author_facet Kawakami, Tomohisa
Shiro, Chiharu
Nishikawa, Hiroki
Kong, Xiangbo
Tomiyama, Hiroyuki
Yamashita, Shigeru
author_sort Kawakami, Tomohisa
collection PubMed
description Digital microfluidic biochips (DMFBs), which are used in various fields like DNA analysis, clinical diagnosis, and PCR testing, have made biochemical experiments more compact, efficient, and user-friendly than the previous methods. However, their reliability is often compromised by their inability to adapt to all kinds of errors. Errors in biochips can be categorized into two types: known errors, and unknown errors. Known errors are detectable before the start of the routing process using sensors or cameras. Unknown errors, in contrast, only become apparent during the routing process and remain undetected by sensors or cameras, which can unexpectedly stop the routing process and diminish the reliability of biochips. This paper introduces a deep reinforcement learning-based routing algorithm, designed to manage not only known errors but also unknown errors. Our experiments demonstrated that our algorithm outperformed the previous ones in terms of the success rate of the routing, in the scenarios including both known errors and unknown errors. Additionally, our algorithm contributed to detecting unknown errors during the routing process, identifying the most efficient routing path with a high probability.
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spelling pubmed-106497592023-11-02 A Deep Reinforcement Learning Approach to Droplet Routing for Erroneous Digital Microfluidic Biochips † Kawakami, Tomohisa Shiro, Chiharu Nishikawa, Hiroki Kong, Xiangbo Tomiyama, Hiroyuki Yamashita, Shigeru Sensors (Basel) Article Digital microfluidic biochips (DMFBs), which are used in various fields like DNA analysis, clinical diagnosis, and PCR testing, have made biochemical experiments more compact, efficient, and user-friendly than the previous methods. However, their reliability is often compromised by their inability to adapt to all kinds of errors. Errors in biochips can be categorized into two types: known errors, and unknown errors. Known errors are detectable before the start of the routing process using sensors or cameras. Unknown errors, in contrast, only become apparent during the routing process and remain undetected by sensors or cameras, which can unexpectedly stop the routing process and diminish the reliability of biochips. This paper introduces a deep reinforcement learning-based routing algorithm, designed to manage not only known errors but also unknown errors. Our experiments demonstrated that our algorithm outperformed the previous ones in terms of the success rate of the routing, in the scenarios including both known errors and unknown errors. Additionally, our algorithm contributed to detecting unknown errors during the routing process, identifying the most efficient routing path with a high probability. MDPI 2023-11-02 /pmc/articles/PMC10649759/ /pubmed/37960623 http://dx.doi.org/10.3390/s23218924 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kawakami, Tomohisa
Shiro, Chiharu
Nishikawa, Hiroki
Kong, Xiangbo
Tomiyama, Hiroyuki
Yamashita, Shigeru
A Deep Reinforcement Learning Approach to Droplet Routing for Erroneous Digital Microfluidic Biochips †
title A Deep Reinforcement Learning Approach to Droplet Routing for Erroneous Digital Microfluidic Biochips †
title_full A Deep Reinforcement Learning Approach to Droplet Routing for Erroneous Digital Microfluidic Biochips †
title_fullStr A Deep Reinforcement Learning Approach to Droplet Routing for Erroneous Digital Microfluidic Biochips †
title_full_unstemmed A Deep Reinforcement Learning Approach to Droplet Routing for Erroneous Digital Microfluidic Biochips †
title_short A Deep Reinforcement Learning Approach to Droplet Routing for Erroneous Digital Microfluidic Biochips †
title_sort deep reinforcement learning approach to droplet routing for erroneous digital microfluidic biochips †
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10649759/
https://www.ncbi.nlm.nih.gov/pubmed/37960623
http://dx.doi.org/10.3390/s23218924
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