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Genome-wide identification of glutamate receptor-like gene family in soybean

Glutamate receptor-like genes (GLRs) are essential in the growth and development of plants and many physiological and biochemical processes; however, related information in soybean is lacking. In this study, 105 GLRs, including 67 Glycine soja and 38 Glycine max GLRs, were identified and divided int...

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Autores principales: Li, Xinran, Zhu, Tianhao, Wang, Xuying, Zhu, Miao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10651524/
https://www.ncbi.nlm.nih.gov/pubmed/38027661
http://dx.doi.org/10.1016/j.heliyon.2023.e21655
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author Li, Xinran
Zhu, Tianhao
Wang, Xuying
Zhu, Miao
author_facet Li, Xinran
Zhu, Tianhao
Wang, Xuying
Zhu, Miao
author_sort Li, Xinran
collection PubMed
description Glutamate receptor-like genes (GLRs) are essential in the growth and development of plants and many physiological and biochemical processes; however, related information in soybean is lacking. In this study, 105 GLRs, including 67 Glycine soja and 38 Glycine max GLRs, were identified and divided into two clades (Clades II and III) according to their phylogenetic relationships. GLR members in the same branch had a relatively conservative motif composition and genetic structure. Furthermore, the soybean GLR family mainly experienced purification selection during evolution. Cis-acting element analysis, gene ontology, and Kyoto Encyclopedia of Genes and Genomic annotations indicated the complexity of the gene regulation and functional diversity of the soybean GLR. Moreover, transcriptome data analysis showed that these GLRs had different expression profiles in different tissues, and Clade III members had higher and more common expression patterns. Additionally, the expression profiles under jasmonic acid treatment and salt stress indicate that the GLR participated in the jasmonic acid signaling pathway and plays a role in salt treatment. This study provides information for a comprehensive understanding of the soybean GLR family and a reference for further functional research and genetic improvement.
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spelling pubmed-106515242023-10-30 Genome-wide identification of glutamate receptor-like gene family in soybean Li, Xinran Zhu, Tianhao Wang, Xuying Zhu, Miao Heliyon Research Article Glutamate receptor-like genes (GLRs) are essential in the growth and development of plants and many physiological and biochemical processes; however, related information in soybean is lacking. In this study, 105 GLRs, including 67 Glycine soja and 38 Glycine max GLRs, were identified and divided into two clades (Clades II and III) according to their phylogenetic relationships. GLR members in the same branch had a relatively conservative motif composition and genetic structure. Furthermore, the soybean GLR family mainly experienced purification selection during evolution. Cis-acting element analysis, gene ontology, and Kyoto Encyclopedia of Genes and Genomic annotations indicated the complexity of the gene regulation and functional diversity of the soybean GLR. Moreover, transcriptome data analysis showed that these GLRs had different expression profiles in different tissues, and Clade III members had higher and more common expression patterns. Additionally, the expression profiles under jasmonic acid treatment and salt stress indicate that the GLR participated in the jasmonic acid signaling pathway and plays a role in salt treatment. This study provides information for a comprehensive understanding of the soybean GLR family and a reference for further functional research and genetic improvement. Elsevier 2023-10-30 /pmc/articles/PMC10651524/ /pubmed/38027661 http://dx.doi.org/10.1016/j.heliyon.2023.e21655 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Li, Xinran
Zhu, Tianhao
Wang, Xuying
Zhu, Miao
Genome-wide identification of glutamate receptor-like gene family in soybean
title Genome-wide identification of glutamate receptor-like gene family in soybean
title_full Genome-wide identification of glutamate receptor-like gene family in soybean
title_fullStr Genome-wide identification of glutamate receptor-like gene family in soybean
title_full_unstemmed Genome-wide identification of glutamate receptor-like gene family in soybean
title_short Genome-wide identification of glutamate receptor-like gene family in soybean
title_sort genome-wide identification of glutamate receptor-like gene family in soybean
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10651524/
https://www.ncbi.nlm.nih.gov/pubmed/38027661
http://dx.doi.org/10.1016/j.heliyon.2023.e21655
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