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Genome-wide identification of glutamate receptor-like gene family in soybean
Glutamate receptor-like genes (GLRs) are essential in the growth and development of plants and many physiological and biochemical processes; however, related information in soybean is lacking. In this study, 105 GLRs, including 67 Glycine soja and 38 Glycine max GLRs, were identified and divided int...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10651524/ https://www.ncbi.nlm.nih.gov/pubmed/38027661 http://dx.doi.org/10.1016/j.heliyon.2023.e21655 |
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author | Li, Xinran Zhu, Tianhao Wang, Xuying Zhu, Miao |
author_facet | Li, Xinran Zhu, Tianhao Wang, Xuying Zhu, Miao |
author_sort | Li, Xinran |
collection | PubMed |
description | Glutamate receptor-like genes (GLRs) are essential in the growth and development of plants and many physiological and biochemical processes; however, related information in soybean is lacking. In this study, 105 GLRs, including 67 Glycine soja and 38 Glycine max GLRs, were identified and divided into two clades (Clades II and III) according to their phylogenetic relationships. GLR members in the same branch had a relatively conservative motif composition and genetic structure. Furthermore, the soybean GLR family mainly experienced purification selection during evolution. Cis-acting element analysis, gene ontology, and Kyoto Encyclopedia of Genes and Genomic annotations indicated the complexity of the gene regulation and functional diversity of the soybean GLR. Moreover, transcriptome data analysis showed that these GLRs had different expression profiles in different tissues, and Clade III members had higher and more common expression patterns. Additionally, the expression profiles under jasmonic acid treatment and salt stress indicate that the GLR participated in the jasmonic acid signaling pathway and plays a role in salt treatment. This study provides information for a comprehensive understanding of the soybean GLR family and a reference for further functional research and genetic improvement. |
format | Online Article Text |
id | pubmed-10651524 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-106515242023-10-30 Genome-wide identification of glutamate receptor-like gene family in soybean Li, Xinran Zhu, Tianhao Wang, Xuying Zhu, Miao Heliyon Research Article Glutamate receptor-like genes (GLRs) are essential in the growth and development of plants and many physiological and biochemical processes; however, related information in soybean is lacking. In this study, 105 GLRs, including 67 Glycine soja and 38 Glycine max GLRs, were identified and divided into two clades (Clades II and III) according to their phylogenetic relationships. GLR members in the same branch had a relatively conservative motif composition and genetic structure. Furthermore, the soybean GLR family mainly experienced purification selection during evolution. Cis-acting element analysis, gene ontology, and Kyoto Encyclopedia of Genes and Genomic annotations indicated the complexity of the gene regulation and functional diversity of the soybean GLR. Moreover, transcriptome data analysis showed that these GLRs had different expression profiles in different tissues, and Clade III members had higher and more common expression patterns. Additionally, the expression profiles under jasmonic acid treatment and salt stress indicate that the GLR participated in the jasmonic acid signaling pathway and plays a role in salt treatment. This study provides information for a comprehensive understanding of the soybean GLR family and a reference for further functional research and genetic improvement. Elsevier 2023-10-30 /pmc/articles/PMC10651524/ /pubmed/38027661 http://dx.doi.org/10.1016/j.heliyon.2023.e21655 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Research Article Li, Xinran Zhu, Tianhao Wang, Xuying Zhu, Miao Genome-wide identification of glutamate receptor-like gene family in soybean |
title | Genome-wide identification of glutamate receptor-like gene family in soybean |
title_full | Genome-wide identification of glutamate receptor-like gene family in soybean |
title_fullStr | Genome-wide identification of glutamate receptor-like gene family in soybean |
title_full_unstemmed | Genome-wide identification of glutamate receptor-like gene family in soybean |
title_short | Genome-wide identification of glutamate receptor-like gene family in soybean |
title_sort | genome-wide identification of glutamate receptor-like gene family in soybean |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10651524/ https://www.ncbi.nlm.nih.gov/pubmed/38027661 http://dx.doi.org/10.1016/j.heliyon.2023.e21655 |
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