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Accelerating Solvent Dynamics with Replica Exchange for Improved Free Energy Sampling

[Image: see text] Molecular reactions in solution typically involve solvent exchange; for example, a surface must partly desolvate for a molecule to adsorb onto it. When these reactions are simulated, slow solvent dynamics can limit the sampling of configurations and reduce the accuracy of free ener...

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Detalles Bibliográficos
Autores principales: Darkins, Robert, Duffy, Dorothy M., Ford, Ian J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10653078/
https://www.ncbi.nlm.nih.gov/pubmed/37864561
http://dx.doi.org/10.1021/acs.jctc.3c00786
Descripción
Sumario:[Image: see text] Molecular reactions in solution typically involve solvent exchange; for example, a surface must partly desolvate for a molecule to adsorb onto it. When these reactions are simulated, slow solvent dynamics can limit the sampling of configurations and reduce the accuracy of free energy estimates. Here, we combine Hamiltonian replica exchange (HREX) with well-tempered metadynamics (WTMD) to accelerate the sampling of solvent configurations orthogonal to the collective variable space. We compute the formation free energy of a carbonate vacancy in the calcite–water interface and find that the combination of WTMD with HREX significantly improves the sampling relative to WTMD without HREX.