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Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection

The SARS-CoV-2 pandemic has affected nations globally leading to illness, death, and economic downturn. Why disease severity, ranging from no symptoms to the requirement for extracorporeal membrane oxygenation, varies between patients is still incompletely understood. Consequently, we aimed at under...

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Autores principales: Katsaouni, Nikoletta, Llavona, Pablo, Khodamoradi, Yascha, Otto, Ann-Kathrin, Körber, Stephanie, Geisen, Christof, Seidl, Christian, Vehreschild, Maria J. G. T., Ciesek, Sandra, Ackermann, Jörg, Koch, Ina, Schulz, Marcel H., Krause, Daniela S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10653545/
https://www.ncbi.nlm.nih.gov/pubmed/37971979
http://dx.doi.org/10.1371/journal.pone.0287725
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author Katsaouni, Nikoletta
Llavona, Pablo
Khodamoradi, Yascha
Otto, Ann-Kathrin
Körber, Stephanie
Geisen, Christof
Seidl, Christian
Vehreschild, Maria J. G. T.
Ciesek, Sandra
Ackermann, Jörg
Koch, Ina
Schulz, Marcel H.
Krause, Daniela S.
author_facet Katsaouni, Nikoletta
Llavona, Pablo
Khodamoradi, Yascha
Otto, Ann-Kathrin
Körber, Stephanie
Geisen, Christof
Seidl, Christian
Vehreschild, Maria J. G. T.
Ciesek, Sandra
Ackermann, Jörg
Koch, Ina
Schulz, Marcel H.
Krause, Daniela S.
author_sort Katsaouni, Nikoletta
collection PubMed
description The SARS-CoV-2 pandemic has affected nations globally leading to illness, death, and economic downturn. Why disease severity, ranging from no symptoms to the requirement for extracorporeal membrane oxygenation, varies between patients is still incompletely understood. Consequently, we aimed at understanding the impact of genetic factors on disease severity in infection with SARS-CoV-2. Here, we provide data on demographics, ABO blood group, human leukocyte antigen (HLA) type, as well as next-generation sequencing data of genes in the natural killer cell receptor family, the renin-angiotensin-aldosterone and kallikrein-kinin systems and others in 159 patients with SARS-CoV-2 infection, stratified into seven categories of disease severity. We provide single-nucleotide polymorphism (SNP) data on the patients and a protein structural analysis as a case study on a SNP in the SIGLEC7 gene, which was significantly associated with the clinical score. Our data represent a resource for correlation analyses involving genetic factors and disease severity and may help predict outcomes in infections with future SARS-CoV-2 variants and aid vaccine adaptation.
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spelling pubmed-106535452023-11-16 Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection Katsaouni, Nikoletta Llavona, Pablo Khodamoradi, Yascha Otto, Ann-Kathrin Körber, Stephanie Geisen, Christof Seidl, Christian Vehreschild, Maria J. G. T. Ciesek, Sandra Ackermann, Jörg Koch, Ina Schulz, Marcel H. Krause, Daniela S. PLoS One Research Article The SARS-CoV-2 pandemic has affected nations globally leading to illness, death, and economic downturn. Why disease severity, ranging from no symptoms to the requirement for extracorporeal membrane oxygenation, varies between patients is still incompletely understood. Consequently, we aimed at understanding the impact of genetic factors on disease severity in infection with SARS-CoV-2. Here, we provide data on demographics, ABO blood group, human leukocyte antigen (HLA) type, as well as next-generation sequencing data of genes in the natural killer cell receptor family, the renin-angiotensin-aldosterone and kallikrein-kinin systems and others in 159 patients with SARS-CoV-2 infection, stratified into seven categories of disease severity. We provide single-nucleotide polymorphism (SNP) data on the patients and a protein structural analysis as a case study on a SNP in the SIGLEC7 gene, which was significantly associated with the clinical score. Our data represent a resource for correlation analyses involving genetic factors and disease severity and may help predict outcomes in infections with future SARS-CoV-2 variants and aid vaccine adaptation. Public Library of Science 2023-11-16 /pmc/articles/PMC10653545/ /pubmed/37971979 http://dx.doi.org/10.1371/journal.pone.0287725 Text en © 2023 Katsaouni et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Katsaouni, Nikoletta
Llavona, Pablo
Khodamoradi, Yascha
Otto, Ann-Kathrin
Körber, Stephanie
Geisen, Christof
Seidl, Christian
Vehreschild, Maria J. G. T.
Ciesek, Sandra
Ackermann, Jörg
Koch, Ina
Schulz, Marcel H.
Krause, Daniela S.
Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection
title Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection
title_full Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection
title_fullStr Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection
title_full_unstemmed Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection
title_short Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection
title_sort dataset of single nucleotide polymorphisms of immune-associated genes in patients with sars-cov-2 infection
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10653545/
https://www.ncbi.nlm.nih.gov/pubmed/37971979
http://dx.doi.org/10.1371/journal.pone.0287725
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