Cargando…
Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection
The SARS-CoV-2 pandemic has affected nations globally leading to illness, death, and economic downturn. Why disease severity, ranging from no symptoms to the requirement for extracorporeal membrane oxygenation, varies between patients is still incompletely understood. Consequently, we aimed at under...
Autores principales: | , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10653545/ https://www.ncbi.nlm.nih.gov/pubmed/37971979 http://dx.doi.org/10.1371/journal.pone.0287725 |
_version_ | 1785147800749604864 |
---|---|
author | Katsaouni, Nikoletta Llavona, Pablo Khodamoradi, Yascha Otto, Ann-Kathrin Körber, Stephanie Geisen, Christof Seidl, Christian Vehreschild, Maria J. G. T. Ciesek, Sandra Ackermann, Jörg Koch, Ina Schulz, Marcel H. Krause, Daniela S. |
author_facet | Katsaouni, Nikoletta Llavona, Pablo Khodamoradi, Yascha Otto, Ann-Kathrin Körber, Stephanie Geisen, Christof Seidl, Christian Vehreschild, Maria J. G. T. Ciesek, Sandra Ackermann, Jörg Koch, Ina Schulz, Marcel H. Krause, Daniela S. |
author_sort | Katsaouni, Nikoletta |
collection | PubMed |
description | The SARS-CoV-2 pandemic has affected nations globally leading to illness, death, and economic downturn. Why disease severity, ranging from no symptoms to the requirement for extracorporeal membrane oxygenation, varies between patients is still incompletely understood. Consequently, we aimed at understanding the impact of genetic factors on disease severity in infection with SARS-CoV-2. Here, we provide data on demographics, ABO blood group, human leukocyte antigen (HLA) type, as well as next-generation sequencing data of genes in the natural killer cell receptor family, the renin-angiotensin-aldosterone and kallikrein-kinin systems and others in 159 patients with SARS-CoV-2 infection, stratified into seven categories of disease severity. We provide single-nucleotide polymorphism (SNP) data on the patients and a protein structural analysis as a case study on a SNP in the SIGLEC7 gene, which was significantly associated with the clinical score. Our data represent a resource for correlation analyses involving genetic factors and disease severity and may help predict outcomes in infections with future SARS-CoV-2 variants and aid vaccine adaptation. |
format | Online Article Text |
id | pubmed-10653545 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-106535452023-11-16 Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection Katsaouni, Nikoletta Llavona, Pablo Khodamoradi, Yascha Otto, Ann-Kathrin Körber, Stephanie Geisen, Christof Seidl, Christian Vehreschild, Maria J. G. T. Ciesek, Sandra Ackermann, Jörg Koch, Ina Schulz, Marcel H. Krause, Daniela S. PLoS One Research Article The SARS-CoV-2 pandemic has affected nations globally leading to illness, death, and economic downturn. Why disease severity, ranging from no symptoms to the requirement for extracorporeal membrane oxygenation, varies between patients is still incompletely understood. Consequently, we aimed at understanding the impact of genetic factors on disease severity in infection with SARS-CoV-2. Here, we provide data on demographics, ABO blood group, human leukocyte antigen (HLA) type, as well as next-generation sequencing data of genes in the natural killer cell receptor family, the renin-angiotensin-aldosterone and kallikrein-kinin systems and others in 159 patients with SARS-CoV-2 infection, stratified into seven categories of disease severity. We provide single-nucleotide polymorphism (SNP) data on the patients and a protein structural analysis as a case study on a SNP in the SIGLEC7 gene, which was significantly associated with the clinical score. Our data represent a resource for correlation analyses involving genetic factors and disease severity and may help predict outcomes in infections with future SARS-CoV-2 variants and aid vaccine adaptation. Public Library of Science 2023-11-16 /pmc/articles/PMC10653545/ /pubmed/37971979 http://dx.doi.org/10.1371/journal.pone.0287725 Text en © 2023 Katsaouni et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Katsaouni, Nikoletta Llavona, Pablo Khodamoradi, Yascha Otto, Ann-Kathrin Körber, Stephanie Geisen, Christof Seidl, Christian Vehreschild, Maria J. G. T. Ciesek, Sandra Ackermann, Jörg Koch, Ina Schulz, Marcel H. Krause, Daniela S. Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection |
title | Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection |
title_full | Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection |
title_fullStr | Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection |
title_full_unstemmed | Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection |
title_short | Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection |
title_sort | dataset of single nucleotide polymorphisms of immune-associated genes in patients with sars-cov-2 infection |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10653545/ https://www.ncbi.nlm.nih.gov/pubmed/37971979 http://dx.doi.org/10.1371/journal.pone.0287725 |
work_keys_str_mv | AT katsaouninikoletta datasetofsinglenucleotidepolymorphismsofimmuneassociatedgenesinpatientswithsarscov2infection AT llavonapablo datasetofsinglenucleotidepolymorphismsofimmuneassociatedgenesinpatientswithsarscov2infection AT khodamoradiyascha datasetofsinglenucleotidepolymorphismsofimmuneassociatedgenesinpatientswithsarscov2infection AT ottoannkathrin datasetofsinglenucleotidepolymorphismsofimmuneassociatedgenesinpatientswithsarscov2infection AT korberstephanie datasetofsinglenucleotidepolymorphismsofimmuneassociatedgenesinpatientswithsarscov2infection AT geisenchristof datasetofsinglenucleotidepolymorphismsofimmuneassociatedgenesinpatientswithsarscov2infection AT seidlchristian datasetofsinglenucleotidepolymorphismsofimmuneassociatedgenesinpatientswithsarscov2infection AT vehreschildmariajgt datasetofsinglenucleotidepolymorphismsofimmuneassociatedgenesinpatientswithsarscov2infection AT cieseksandra datasetofsinglenucleotidepolymorphismsofimmuneassociatedgenesinpatientswithsarscov2infection AT ackermannjorg datasetofsinglenucleotidepolymorphismsofimmuneassociatedgenesinpatientswithsarscov2infection AT kochina datasetofsinglenucleotidepolymorphismsofimmuneassociatedgenesinpatientswithsarscov2infection AT schulzmarcelh datasetofsinglenucleotidepolymorphismsofimmuneassociatedgenesinpatientswithsarscov2infection AT krausedanielas datasetofsinglenucleotidepolymorphismsofimmuneassociatedgenesinpatientswithsarscov2infection |