Cargando…

The complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890 (Chloranthaceae)

In this study, we sequenced and assembled the complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890. The total length of the complete chloroplast sequence was found to be 158,002 bp. It consisted of a large single-copy (LSC) region of 87,127 bp, a small single-copy (SSC) region...

Descripción completa

Detalles Bibliográficos
Autores principales: Yao, Shu-Ting, Lu, Yong-Bin, Zhang, Zhan-Jiang, Li, Cui, Wang, Peng-Fei, Qin, Xin-Mei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10653614/
https://www.ncbi.nlm.nih.gov/pubmed/38026494
http://dx.doi.org/10.1080/23802359.2023.2278818
_version_ 1785136453225807872
author Yao, Shu-Ting
Lu, Yong-Bin
Zhang, Zhan-Jiang
Li, Cui
Wang, Peng-Fei
Qin, Xin-Mei
author_facet Yao, Shu-Ting
Lu, Yong-Bin
Zhang, Zhan-Jiang
Li, Cui
Wang, Peng-Fei
Qin, Xin-Mei
author_sort Yao, Shu-Ting
collection PubMed
description In this study, we sequenced and assembled the complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890. The total length of the complete chloroplast sequence was found to be 158,002 bp. It consisted of a large single-copy (LSC) region of 87,127 bp, a small single-copy (SSC) region of 18,541 bp, and a pair of inverted repeat (IR) regions, each with a length of 26,167 bp. The overall GC content of the complete chloroplast genome was 38.9%, with the LSC region, SSC region, and IR regions exhibiting GC contents of 37.4%, 34.1%, and 43.1%, respectively. The annotation of the chloroplast genome revealed a total of 131 genes, comprising 86 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis revealed that the seven sampled species of Chloranthus were divided into two clades. Within the clade characterized by long filamentous anther connectives, C. nervosus showed the closest relation to C. japonicus. These findings validated the previous preliminary results on the phylogenetic relationships of the seven species of Chloranthus with strong support.
format Online
Article
Text
id pubmed-10653614
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-106536142023-11-10 The complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890 (Chloranthaceae) Yao, Shu-Ting Lu, Yong-Bin Zhang, Zhan-Jiang Li, Cui Wang, Peng-Fei Qin, Xin-Mei Mitochondrial DNA B Resour Plastome Announcement In this study, we sequenced and assembled the complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890. The total length of the complete chloroplast sequence was found to be 158,002 bp. It consisted of a large single-copy (LSC) region of 87,127 bp, a small single-copy (SSC) region of 18,541 bp, and a pair of inverted repeat (IR) regions, each with a length of 26,167 bp. The overall GC content of the complete chloroplast genome was 38.9%, with the LSC region, SSC region, and IR regions exhibiting GC contents of 37.4%, 34.1%, and 43.1%, respectively. The annotation of the chloroplast genome revealed a total of 131 genes, comprising 86 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis revealed that the seven sampled species of Chloranthus were divided into two clades. Within the clade characterized by long filamentous anther connectives, C. nervosus showed the closest relation to C. japonicus. These findings validated the previous preliminary results on the phylogenetic relationships of the seven species of Chloranthus with strong support. Taylor & Francis 2023-11-10 /pmc/articles/PMC10653614/ /pubmed/38026494 http://dx.doi.org/10.1080/23802359.2023.2278818 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
spellingShingle Plastome Announcement
Yao, Shu-Ting
Lu, Yong-Bin
Zhang, Zhan-Jiang
Li, Cui
Wang, Peng-Fei
Qin, Xin-Mei
The complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890 (Chloranthaceae)
title The complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890 (Chloranthaceae)
title_full The complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890 (Chloranthaceae)
title_fullStr The complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890 (Chloranthaceae)
title_full_unstemmed The complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890 (Chloranthaceae)
title_short The complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890 (Chloranthaceae)
title_sort complete chloroplast genome of chloranthus nervosus collett ex hemsl. 1890 (chloranthaceae)
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10653614/
https://www.ncbi.nlm.nih.gov/pubmed/38026494
http://dx.doi.org/10.1080/23802359.2023.2278818
work_keys_str_mv AT yaoshuting thecompletechloroplastgenomeofchloranthusnervosuscollettexhemsl1890chloranthaceae
AT luyongbin thecompletechloroplastgenomeofchloranthusnervosuscollettexhemsl1890chloranthaceae
AT zhangzhanjiang thecompletechloroplastgenomeofchloranthusnervosuscollettexhemsl1890chloranthaceae
AT licui thecompletechloroplastgenomeofchloranthusnervosuscollettexhemsl1890chloranthaceae
AT wangpengfei thecompletechloroplastgenomeofchloranthusnervosuscollettexhemsl1890chloranthaceae
AT qinxinmei thecompletechloroplastgenomeofchloranthusnervosuscollettexhemsl1890chloranthaceae
AT yaoshuting completechloroplastgenomeofchloranthusnervosuscollettexhemsl1890chloranthaceae
AT luyongbin completechloroplastgenomeofchloranthusnervosuscollettexhemsl1890chloranthaceae
AT zhangzhanjiang completechloroplastgenomeofchloranthusnervosuscollettexhemsl1890chloranthaceae
AT licui completechloroplastgenomeofchloranthusnervosuscollettexhemsl1890chloranthaceae
AT wangpengfei completechloroplastgenomeofchloranthusnervosuscollettexhemsl1890chloranthaceae
AT qinxinmei completechloroplastgenomeofchloranthusnervosuscollettexhemsl1890chloranthaceae